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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttatttacaagtgttggttcaaacttcaattagtttgttgcatgttgcatgtttgagattctcttctaccaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG

Basic information

species Zea mays
transcript GRMZM2G174596_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174596_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g03060.1 (Oryza sativa), 3'ss of exon 4
---------------------------gtcttat--ttacaagtgttggttcaaacttcaattagtttgttgcatgttgcatgt-ttgagattctcttctaccaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG
                            || | |  || || || |  |  ||||            |    | || |  ||   ||   ||    |  |  ||||| || ||| |||||||||||| | ||||||| |||||||| ||||||||  | ||||| ||||  ||||||||||||||||||||| |||||
gtcttaattttcaaatgttattaagtcttcatgttcttccatgtttctgaacaaagacaggaagacctaacac-tgctctatacattttcatgtgttcatgtcaatgaagTATTATGGGCACTCCAAATGAAGAAACTTGGCCAGGTGTTGCTTCACTACCTGACTACATATCAACTTTCCCAAAGTGGCCATCTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4730272|gb|AI649438.1|AI649438
EST:     GCGCTTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAG                         AATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC
genomic: GCGCTTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAGgtcttattta ... accaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC
EST: gi|50329879|gb|CO525005.1|CO525005
EST:     GCGCTTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAG                         AATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC
genomic: GCGCTTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAGgtcttattta ... accaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC
EST: gi|50324561|gb|CO519687.1|CO519687
EST:     GCGCCTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAG                         AATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC
genomic: GCGCTTTTTCCTGGCGACTCTGAGATCGATGAGCTGTTTAAGATTTTCAGgtcttattta ... accaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcaattagtttgttgcatgttgcatgtttgagattctcttctaccaatgcagAATTTTGGGCACTCCAACTAAAGAAACATGGCCAGGCGTTGCTTCGTTGCCTGATTACAAGTCAACTTTCCCAAAGTGGCCACCTGTG
                                    ttctcttctacc  CT-rich tract
     aattagttt  TA-rich tract