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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgtatcatacttaaacaaaagttggcctctgaacagtgattttagtactcattatttatttgttgtaccataattttgaagtcctctactttttgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATG

Basic information

species Zea mays
transcript GRMZM2G173868_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G173868_T02 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g56670.3 (Oryza sativa), 3'ss of exon 7
tatgtatcatacttaaacaaaagttggcctctgaacagtgattttagtactcattatttatttgttgtaccataattttgaagtcctctactttt----tgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATG
 |||  ||||   |         ||  |||||||||| | |||| ||| || ||      | |||| | |  |    || || ||    | | |     |||||||| ||| |||||||||||||| || ||||||||||||||| ||||||| || |||||  | ||||||||||||||||||||||| ||||||||||||||
catgcttcattagttttggttgtttatcctctgaacactaattt-agttcttatcgccagtctgttattctttg---ttaaactcactgattgtcacgatgcagTTTATGAACGAGTTACAAAAAACTCTGTGCGTGGAATATGGGCACGCAGGTCGAAACTTGACCTTGTTGGTGCCCATATAAATGTATTTACTGGTGAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76281155|gb|DV020723.1|DV020723
EST:     TACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTG                         TTTTTGAGCGAGTTACNNNNNNNTCAGTGCGTGGAATATGGTCACGCAGAT
genomic: TACTTTGACACTGGAATTTGGCATATTGAGTCGCTTGACTAATAATACTGgtaattctta ... ctttttgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtactcattatttatttgttgtaccataattttgaagtcctctactttttgcagTTTTTGAGCGAGTTACAAAAAAATCAGTGCGTGGAATATGGTCACGCAGATCAAAACTCAATCTTGTTGGTGCCCATATAAATGTCTTTACTGGTGAATG
                                      tcctctactttttgc  CT-rich tract
       attatttatttgttgt  TA-rich tract