1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catttattatgggtactcactctttttgtgctatgaggtgaaactcaaggaaattaaattaccttgttacaagttcttatgaagatgtaacattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGGGCTGACACAATGAGTGAGGTGAACAAGAAGCACCAGAAAGAATTTGAA
species | Zea mays |
transcript | GRMZM2G171745_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|60346665|gb|DN213638.1|DN213638
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|78118434|gb|DV536820.1|DV536820
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|211195518|gb|FL100642.1|FL100642
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGAACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|71427328|gb|DR808378.1|DR808378
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|148943925|gb|EC889005.2|EC889005
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|148972927|gb|EE023942.2|EE023942
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|78112152|gb|DV530548.1|DV530548
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|74242379|gb|DT650293.1|DT650293
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|60340320|gb|DN207293.1|DN207293
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|211178525|gb|FK980683.1|FK980683
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCANGAGAAAAATCA-GTEST: gi|76931006|gb|DV172592.1|DV172592
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAA-TCAAGT
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|211192853|gb|FL432744.1|FL432744
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: TGATAGAGACTTTGTCTGATTG GTTGGGAACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|78118433|gb|DV536819.1|DV536819
genomic: TGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|32809485|gb|CD961719.1|CD961719
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGAACCATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTEST: gi|76931005|gb|DV172591.1|DV172591
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGA-CATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGT
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|71427327|gb|DR808377.1|DR808377
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|32823261|gb|CD962983.1|CD962983
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGAACCATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTEST: gi|78112153|gb|DV530549.1|DV530549
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGA-CATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGT
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GGTTGGGGAAATCAGATAGAATGTTGCATCAAATTCAGGAGAAAATCAAGTEST: gi|31352916|gb|CD437273.1|CD437273
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagG-TTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGT
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|89251568|gb|DY623354.1|DY623354
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|32823432|gb|CD963154.1|CD963154
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GTTGGGAACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGEST: gi|67021495|gb|CO450244.1|CO450244
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
EST: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTG GGTGGG-ACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
genomic: GATCTTACACCTGATCAGCTAAAGAACATGATAGAGACTTTGTCTGATTGgtgtgtatgc ... cattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTG
caaggaaattaaattaccttgttacaagttcttatgaagatgtaacattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGGGCTGACACAATGAGTGAGGTGAACAAGAAGCACCAGAAAGAATTTGAA
atgtaac putative branch site (score: 3)
aaattaaattacctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttattatgggtactcactctttttgtgctatgaggtgaaactcaaggaaattaaattaccttgttacaagttcttatgaagatgtaacattgctcagGTTGGGGACATCAGATAGACTGTTGCATCAAATTCAGGAGAAAATCAAGTGGGCTGACACAATGAGTGAGGTGAACAAGAAGCACCAGAAAGAATTTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA