1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagactgtggcagctctcttctgatatgtatggaacttgtgattcacttataaattttcagttgtaactcttactgttgatcgtatctttggccgtacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
species | Zea mays |
transcript | GRMZM2G171406_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|16919153|gb|BM074062.1|BM074062
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|60397188|gb|DN230004.1|DN230004
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|71429669|gb|DR810719.1|DR810719
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|71441217|gb|DR822267.1|DR822267
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|94475040|gb|EB703998.1|EB703998
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|91874947|gb|EB404904.1|EB404904
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|93012917|gb|EB638437.1|EB638437
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|89250482|gb|DY622268.1|DY622268
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|5069938|gb|AI737903.1|AI737903
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: AGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAGEST: gi|89251407|gb|DY623193.1|DY623193
genomic: AGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
EST: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATG ATGCTGAAGAATGCAAGCCTTGAAGAG
genomic: TATCATCTTTAGGAAGCCGGAGCTTCAAAGCAGCGTCTGACGATCTGATGgtgagactgt ... tacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
taaattttcagttgtaactcttactgttgatcgtatctttggccgtacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
tacttttc CT-rich tract
tatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagactgtggcagctctcttctgatatgtatggaacttgtgattcacttataaattttcagttgtaactcttactgttgatcgtatctttggccgtacttttcagATGCTGAAGAATGCAAGCCTTGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA