1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtctttctaagatcgtatgctgatgcatctaagtaggaaagcaatgaaagaaaatggtgaaccggctaaattcgattggatgaaaatatccgttcacatcttttgaagtgtcatagtgcaaccaacctaaggtatgtgcctggacttcatctgttgcttttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTACTGCAAATGGGCCGTGGTGACACTTGCTTCAAAGGGATGCATGGCAAAG
species | Zea mays |
transcript | GRMZM2G171400_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACATTGACCTTTGTTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGG GGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTAEST: gi|29945148|gb|CB815493.1|CB815493
genomic: AACATTGACCTTTGCTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGGgtgagtcttt ... ttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGG GGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTAEST: gi|211355181|gb|FL368878.1|FL368878
genomic: AACATTGACCTTTGCTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGGgtgagtcttt ... ttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTA
EST: AACATTGACCTTTGCTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGG GGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTAEST: gi|13557621|gb|BG548977.1|BG548977
genomic: AACATTGACCTTTGCTTCGCCAACGAAGATGAAGCTAGGGAGGTTATAGGgtgagtcttt ... ttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTA
EST: AACGAAGATGAAGCTAGGGAGGTTATAGG GGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTA
genomic: AACGAAGATGAAGCTAGGGAGGTTATAGGgtgagtcttt ... ttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTA
agtgcaaccaacctaaggtatgtgcctggacttcatctgttgcttttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTACTGCAAATGGGCCGTGGTGACACTTGCTTCAAAGGGATGCATGGCAAAG
cttttatct CT-rich tract
ttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttctaagatcgtatgctgatgcatctaagtaggaaagcaatgaaagaaaatggtgaaccggctaaattcgattggatgaaaatatccgttcacatcttttgaagtgtcatagtgcaaccaacctaaggtatgtgcctggacttcatctgttgcttttatctgtagGGGAAGCCTGGAATCAGATCCAGAGGAGGCGCTTGCATTCTTGGGCAAGTACTGCAAATGGGCCGTGGTGACACTTGCTTCAAAGGGATGCATGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG