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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccagtgttctctctatcttgcagATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCT

Basic information

species Zea mays
transcript GRMZM2G171390_T05
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41780.1 (Oryza sativa), 3'ss of exon 6
---------------gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatgaaatctcctgatgtaacggccggccagtgttctctctatctt--gcagATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCT
               || |   |  ||| |  |     |      |  | |  |||| | ||| ||  | | |||   | |             |  |||  ||| |   ||||||||||||||||||||||| || |||||||| || |||||||||||  | || |||||||| |||||||| || || || ||||||||||||||||| |
gtaaaaggagatcatgtcatgctgcagcaaccatactatgtggaactgtcctgtgcatttcaa-gatttttactggactgaaaagtaatggaattgttcttgatcatcaacagATAGTGATGGAGCTACCAGTGGAGCATGGACTTCTTCTGGACAATCTATTAGATCTTGCTCATGCTCCTTTTACTCATACATCCACCTTTGCCAAGGGTT

upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os10g41760.1 (Oryza sativa), 3'ss of exon 6
----------gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaat--gaaatctcctgatgtaacggccggccagtg----ttctctctatctt--gcagATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCT
           | |  | | |     | | || | ||  |  |     | |  ||   |   |  | |  | |    || |      | ||    || |||  ||| |   ||||| |||||||||||||| || || |||||||| || |||||||||||  | ||  ||||||| ||||||||  | || |||||||||||||||||||| |
gtaaaacgaaatcatgtcatactgcagcaatcttccatggtgaaagtgtcctgtgtttttcaagttttttttactggactgtaaagtaatggaatttatcttcatcatcaacagATGGTGATGGAGCTACCGGTGGAGCATGGACTTCTGCTGGACAATCTATTAGATATTGCTCATGCTCCTTTTGCTCATACGTCCACCTTTGCCAAGGGTT

upper sequence: GRMZM2G171390_T04 (Zea mays), 3'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 3'ss of exon 5
-----gtaaaattaaagctaggaattcctacaatgcaatgcaatgcaatgcaatga-aatctcctgatgtaacggccggccagtgttctctctatcttgcagATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCT
      ||  | |  |   ||   || ||    |   |     |  || ||| |     |||||| || |      |   || | || | |     |||||||| || ||||| || ||||| |||||||| || || ||||| || ||  |||| ||||| || || |||||||| || || |||||||||||||| || |
gtatgttatcaatgcattcagatctttctgttgtttgaatacttaaaaggcatttttggtctcctcattt------ctatcattattttttgggaattgcagATTGTCATGGAACTTCCAGTGGAACATGGGCTTCTTCTGGATAACCTTTTGGATCTTGCACATGCCCCTTTCACTCATACATCCACCTTTGCCAAAGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgcaatgaaatctcctgatgtaacggccggccagtgttctctctatcttgcagATAGTGATGGAGCTACCAGTTGAACATGGACTCCTCCTGGACAATCTCCTGGACCTTGCTCACGCTCCTTTCACACACACGTCCACCTTTGCCAAGGGCT
                   atgtaac  putative branch site (score: 3)
                                    tgttctctctatctt  putative PPT
     aatgaaat  TA-rich tract