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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcaaccttcatttgcttactcataattatactttctgcatgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC

Basic information

species Zea mays
transcript GRMZM2G171060_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g49980.1 (Oryza sativa), 3'ss of exon 5
gtaagctca--accttcatt-tgcttactcataattat---------actttctgcatgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
|| || | |  |||||   | ||    ||  | ||  |         | || ||| ||||| | ||| || |||     || ||| |  | | | |   ||||| || ||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| || ||||| || |||||||||||||||
gtgagtttactaccttttctgtgtgagcttgtcatccttgagtggctaattactgaatgatgtttcaactgaag-----tggtctttctcatgtat---ttcagAGGCCTGGAATTGATAAAGGACCGGGAAGTTTGCTGCTACATGATCTCTTGCAAGGACTCTGTAAACATAGATGTTGTCATTGATTGGCTTATCAAGCAC

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g49980.2 (Oryza sativa), 3'ss of exon 5
gtaagctca--accttcatt--------tgcttactcataatta--tactttctgcatgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
|| || | |  |||||   |        |  | |  | | | |   || || ||| ||||| | ||| || |||     || ||| |  | | | |   ||||| || ||||||||||||||||||||||| ||||| |||||||||||||| || ||||| ||||| |||||||| || ||                      
gtgagtttactaccttttctgtgtgagcttgtcatccttgagtggctaattactgaatgatgtttcaactgaag-

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA02G41170.1 (Glycine max), 3'ss of exon 5
-------------------gtaagctcaaccttcatttgcttactcataattatactttctg---catgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
                    |   || |    |  |||  |||   | ||  |    | |||     | || |  |   |  | |  |  | | |  ||| |  ||| |||||| ||||| || |  || || ||| | ||||| || ||||| ||||| || || ||||||||||| |||||||| || ||||| |||||||| ||||| |||
gtgagttctagatatcaatattgtcttatatcttttttctttaaaaaaaaaaaattgtcctgatgtgttatgtaactaattgaacatttggattttctccttggttgatttcagAGGACTTGAGTCAATTAAAGACAGAGAGGTCTGCTGCTATATGATTTCATGCAAGGATTCTGTTAACATAGATGTAGTCATTGACTGGCTAATCAAACAC

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv14s0006g01090.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------gtaagctcaaccttcatttgcttact--cataattata-----ctttctgcatgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
                            |||  |||   || || | ||   |  |   ||   |      ||| |  ||  | | |     ||   | | |   ||| |   |  | |||||||| |  ||  | |  || |  |   | |||||  ||||||||||||||||||| |||||||| |||||||||||| | || || || ||||||||||| |||
gtgagttcagaaccagacgagttttcaataaaatcatttttgatatactatttgcctcgatggcaaacctttttttatattttgtgttttgacatattttttttcctccttggtggtggttttcagAGATCTCAAGTCAATCACAGGTAGAGAGGTGGGTTGCTACATGATCTCGTGCAAGGATTCCGTGAACATAGACCTTGTAATTGATTGGCTTATCAAACAC

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ11035 (Selaginella moellendorffii), 3'ss of exon 5
gtaagctcaaccttcatttgcttactcataattatactttctgcatgatatctcagct--caagctctctgctctcttccctttttgtttt--cagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
                            | | ||  |   | |||   |  |||   |  | ||     || |||     ||| ||  | |  |||  |  || |||   |   |||| ||||||||| |||||||||||||||||| ||| | ||    ||||| || || |||||||| |||||  ||||||||
---------------------------gtgagtaagccagcagcaaagttcctcttttttctagacgattgttcttacggcttctttctcttgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGCAAGAACTCCACCAACATCGAAGTAGTCATCGAGTGGCTCGTCAAGCAC

upper sequence: GRMZM2G171060_T02 (Zea mays), 3'ss of exon 6
lower sequence: EFJ07633 (Selaginella moellendorffii), 3'ss of exon 5
gtaagctcaaccttcatttgcttactcataattatactttctgcatgatatctcagct-caagctctctgctctcttccctttttgttttcagTGGA--CTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
                            | | ||  |   | |||   | ||||   | | ||     || |||     ||| ||  | ||   |||   || |||   |   |||| ||||||||| |||||||||||||||||| ||| | ||    ||||| || || |||||||| |||||  ||||||||
---------------------------gtgagtaagcaagcagcaaagtttctctttttctagacgattgttcttacggcttgtttctctcgcagGAGCTTGCAATCTCTGGCGGACAGGGAGGTTTCTTGCTACATGATCTCGTGCAAGAACTCCACCAACATCGAAGTAGTCATCGAGTGGCTCGTCAAGCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16927627|gb|BM080696.1|BM080696
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|76286949|gb|DV026517.1|DV026517
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|113702664|gb|EE680168.1|EE680168
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|211076142|gb|FL255312.1|FL255312
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGAC
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGAC
EST: gi|34391306|gb|CF384534.1|CF384534
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|32806604|gb|CD958838.1|CD958838
EST:     AAAATTGACAAGTCAGAAGCGCCTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|76286861|gb|DV026429.1|DV026429
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|28566462|gb|CB278110.1|CB278110
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGA-GCAGGCCTNGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCCACATGATCTCG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCG
EST: gi|149077255|gb|EE165928.2|EE165928
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|8103003|gb|AW927671.1|AW927671
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGTGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|32809543|gb|CD961777.1|CD961777
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|40287223|gb|CK327615.1|CK327615
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|78086343|gb|DV514736.1|DV514736
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|78113799|gb|DV532188.1|DV532188
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|211078882|gb|FL255321.1|FL255321
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAAT-GATAAAGGACCCGGGAGGTTTGTTGCTACATGATCTNCG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACC-GGGAGGTTTGTTGCTACATGATCT-CG
EST: gi|78086342|gb|DV514735.1|DV514735
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|148953854|gb|EC899230.2|EC899230
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|78113800|gb|DV532189.1|DV532189
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|32919725|gb|CF024537.1|CF024537
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|110945770|gb|EE165927.1|EE165927
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|89760881|gb|DY689115.1|DY689115
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|12046965|gb|BF729104.1|BF729104
EST:     AAAATTGGCAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGTGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|38229789|gb|CF920102.1|CF920102
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
EST: gi|32793765|gb|CD946001.1|CD946001
EST:     AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCACCT                         TGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG
genomic: AAAATTGACAAGTCAGAAGCGCTTTCGAAGCAGGCCTTGGTTGATCAACTgtaagctcaa ... ttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgcatgatatctcagctcaagctctctgctctcttccctttttgttttcagTGGACTGGAATTGATAAAGGACCGGGAGGTTTGTTGCTACATGATCTCGTGTAAGGATTCTGTGAACATAGACGTCGTCATCGACTGGCTTATCAAGCAC
                   ctcaagctctctgctc  CT-rich tract
                                          tttttgtttt  TA-rich tract