1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttcgctgagttgttcttgctatatactttatatgttgtttcaacagccacctcttgtttctcttgagtgttgagtcattttagtgatgcaactggactgtgttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG
species | Zea mays |
transcript | GRMZM2G169516_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|71430054|gb|DR811104.1|DR811104
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGAGGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|32928612|gb|CF033424.1|CF033424
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTAEST: gi|166583653|gb|EG054917.1|EG054917
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTA
EST: GGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGNGTTTTAGGGATTGATGGTGTACAGEST: gi|71324170|gb|DR798788.1|DR798788
genomic: GGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|24934455|gb|CA452673.1|CA452673
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTEST: gi|211501402|gb|FL138828.1|FL138828
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGT
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|71433347|gb|DR814397.1|DR814397
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|71759019|gb|DR956956.1|DR956956
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|211073093|gb|FL464915.1|FL464915
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: CATG-TGAAAATTTGCAAAATACTGGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|94473827|gb|EB702785.1|EB702785
genomic: CATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|91870855|gb|EB401116.1|EB401116
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|88752600|gb|DY536741.1|DY536741
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|24765189|gb|CA400348.1|CA400348
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|6973599|gb|AW438335.1|AW438335
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGEST: gi|71431465|gb|DR812515.1|DR812515
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
EST: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAG GTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
genomic: AATACATGTTGAAAATTTGCAAAATACTTGGGATGGCTGCTTTAGTTGAGgttcgctgag ... gttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAG
gtttctcttgagtgttgagtcattttagtgatgcaactggactgtgttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG
tcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgctgagttgttcttgctatatactttatatgttgtttcaacagccacctcttgtttctcttgagtgttgagtcattttagtgatgcaactggactgtgttgctgaagGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCG
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