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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcctcgtctactttttttttgtggctgagattatggaagatatcaaaatattatgatgaatccagtcacacatagctcattttaattcctggtggtgcagGTTATTCGAATGACTAAATATGATTATAGACTCTCAAATAAGTTGGACACTGACCTGCAAAAACTACGTTGCAGAGTCAATTATCATTCTTTGAGATTTA

Basic information

species Zea mays
transcript GRMZM2G168614_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50322961|gb|CO518087.1|CO518087
EST:     CTCCACGGTGTTACTTGAACCGTGTCTTACCAGCACTTCTGAAGAAACAT                         GTTATTCGAATGACTAAATATGATTATAGACTCTCAAATAAGTTGGACACT
genomic: CTCCACGGTGTTACTTGAACCGTGTCTTACCAGCACTTCTGAAGAAACATgtaagttgtg ... ggtggtgcagGTTATTCGAATGACTAAATATGATTATAGACTCTCAAATAAGTTGGACACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatattatgatgaatccagtcacacatagctcattttaattcctggtggtgcagGTTATTCGAATGACTAAATATGATTATAGACTCTCAAATAAGTTGGACACTGACCTGCAAAAACTACGTTGCAGAGTCAATTATCATTCTTTGAGATTTA
                                  ttttaat  putative branch site (score: 3)
                               tcattttaatt  TA-rich tract