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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctgttaattgtcttttgattctccacttccgataacacaacttaaactattagttgatttggttttgcatccaaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG

Basic information

species Zea mays
transcript GRMZM2G167932_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167932_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g03890.2 (Oryza sativa), 3'ss of exon 6
gtttgctgttaattgtcttttgattctccacttccgataacacaacttaaactattagttgatttggt-tttgcatccaaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG
    |  |||  || | | |  ||| |  | | |   | | |  | |  || | |   |||| || || |||| ||  | ||||||||||||| || ||||| ||||| |||||||||||||| ||||| || ||||| |||||||| || |||
----gtggttccttatatgt--attttttattac--gtgatatga-tagaattttcttttgacttagtgtttgtatg-acattggcagGAGACCGGAGGCTACTATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351085|gb|CD435442.1|CD435442
EST:     AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAG                         GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
genomic: AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAGgtttgctgtt ... aaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
EST: gi|31354051|gb|CD438408.1|CD438408
EST:     AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAG                         GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
genomic: AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAGgtttgctgtt ... aaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
EST: gi|22542391|gb|BU092829.1|BU092829
EST:     AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAG                         GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
genomic: AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAGgtttgctgtt ... aaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
EST: gi|8367891|gb|BE050836.1|BE050836
EST:     AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAG                         GAGACTGGCGGCTATTATGCTTTCG-GGAATTCGAGGAACTCAGCGGTGTA
genomic: AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAGgtttgctgtt ... aaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
EST: gi|32847652|gb|CD987333.1|CD987333
EST:     AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAG                         GAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA
genomic: AGAAATTTGGCCGGCTTATTCCTGACGGTGTTGCTATCAGAAGCCGAAAGgtttgctgtt ... aaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccgataacacaacttaaactattagttgatttggttttgcatccaaattggcagGAGACTGGCGGCTATTATGCTTTCGTGGAATTCGAGGAACTCAGCGGTGTACACAATGCGTTAAAG
           aacttaaactatta  TA-rich tract