1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagatcgagcaccaccacctggtcctggacctcgttcgcccccactgaagaaattcaatcttttctttctctttttttttccgcgcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGACGGCCGGGCCAGACGGGAACGTGCAGTCCGAGCTTCTGTTCCGGAAGGA
species | Zea mays |
transcript | GRMZM2G167520_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|71758586|gb|DR956523.1|DR956523
genomic: TCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|148942554|gb|EC887573.2|EC887573
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|76291094|gb|DV030662.1|DV030662
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|71763546|gb|DR961483.1|DR961483
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|71767449|gb|DR965386.1|DR965386
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATTTGCTCATGAEST: gi|71765854|gb|DR963791.1|DR963791
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|89759713|gb|DY688444.1|DY688444
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|93282999|gb|EB675263.1|EB675263
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCTTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTATTACAACGATCTGTTCATGAEST: gi|91052459|gb|EB162877.1|EB162877
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGTTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|88747178|gb|DY531319.1|DY531319
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGTTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|149105204|gb|EE290690.2|EE290690
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|149099275|gb|EE185309.2|EE185309
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGAEST: gi|101399158|gb|EB821453.1|EB821453
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
EST: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCA ACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
genomic: CACCATTTTCAGCTTCAACTACAGACCTCTCAACCCCTACGGAGTGATCAgtgagatcga ... gcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGA
ccccactgaagaaattcaatcttttctttctctttttttttccgcgcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGACGGCCGGGCCAGACGGGAACGTGCAGTCCGAGCTTCTGTTCCGGAAGGA
ttcaatcttttctttc CT-rich tract
tttctcttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatcgagcaccaccacctggtcctggacctcgttcgcccccactgaagaaattcaatcttttctttctctttttttttccgcgcgcgtgcagACGACACGGCGATGCTATGGGGCATCAAGTACTACAACGATCTGCTCATGACGGCCGGGCCAGACGGGAACGTGCAGTCCGAGCTTCTGTTCCGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT