1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agagtgtttgtttttgtctaatttgaagtggtttttctgtcgtttcagttgtatatgtttgtcatgtcagttattttttttgtatggtttctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGTAATGGGAGATCAAGCCAAGGGGGTGGAGGTTACCGCAGTACTTACCGTG
species | Zea mays |
transcript | GRMZM2G167356_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGTEST: gi|148946214|gb|EC891510.2|EC891510
genomic: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGT
EST: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGGAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCEST: gi|26455798|gb|CA827381.1|CA827381
genomic: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATC
EST: TGCAAAGAGTCATATCACAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGTEST: gi|78108850|gb|DV527267.1|DV527267
genomic: TG-AAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGT
EST: TTGAA-GAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAA-GAAAACATGGATCTGATAACATCGGEST: gi|211074280|gb|FK950693.1|FK950693
genomic: T-GAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAA-CATGGATCTGATAACATCGG
EST: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAG GTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGT
genomic: TTGAAAGAGTCATATCAGAGGGGAGAATGCGTGATCTTGGTGGGAAGCAGgttagatttt ... ctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGT
cagttgtatatgtttgtcatgtcagttattttttttgtatggtttctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGTAATGGGAGATCAAGCCAAGGGGGTGGAGGTTACCGCAGTACTTACCGTG
tttctgttttc CT-rich tract
agttattttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagtgtttgtttttgtctaatttgaagtggtttttctgtcgtttcagttgtatatgtttgtcatgtcagttattttttttgtatggtttctgttttcagGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGGATCTGATAACATCGGTAATGGGAGATCAAGCCAAGGGGGTGGAGGTTACCGCAGTACTTACCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG