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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctttcatgcttaccttacctctatagttttaagaaccaactttggaacatattagagtatcaagaatttatttatctttcagcagATGCAAGAATCTGGCTCCATGGAAAATGAAGGCAATGAAAATGAGCAGCCTGACACGTTATCCTTTGAACAGTCTATTCTAAAGATAACTAGCATAAAAG

Basic information

species Zea mays
transcript GRMZM2G165945_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165945_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g05900.1 (Oryza sativa), 3'ss of exon 2
gtccctttcatgcttaccttacctctatagttttaagaa----ccaactttg--gaacatattagagtatcaagaatttatttatctttcagcagATGCAAGAATCTGGCTCCATGGAAAATGAAGGCAATGAAAATGAGCAGCCTGACACGTTATCCTTTGAACAGTCTATTCTAAAGATAACTAGCATAAAAG
|||| | |||||| ||  |      |||||||||   |       || | ||    ||||||| | |   ||||  || |||||||| || |||||||||||||||| |||| |  || || |||||| | ||| ||||| ||  ||| ||  |||| |||||||| || || ||||||||||||||||| ||| 
gtccttctcatgcctatttg-----tatagttttggaagatagttaattgtgctagacatattcgtg---caaggtttgatttatctctctgcagATGCAAGAATCTTGCTCTACTGATAAAGAAGGCGAAGAAGATGAGAAGATTGATACTCTATCATTTGAACAATCCATACTAAAGATAACTAGCATGAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaccaactttggaacatattagagtatcaagaatttatttatctttcagcagATGCAAGAATCTGGCTCCATGGAAAATGAAGGCAATGAAAATGAGCAGCCTGACACGTTATCCTTTGAACAGTCTATTCTAAAGATAACTAGCATAAAAG
                                    tttatttatctttc  CT-rich tract
                  atattagagtatcaag  TA-rich tract