Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattaaaggatatactgttgtttatttgttccctttgtctgtacgttgttcagtaaccaaatacatgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATCTTGTCAATGAAACTAAGCTGGATGATGAGATTAAGTCATGGCTTGCATT

Basic information

species Zea mays
transcript GRMZM2G165747_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211325033|gb|FL127492.1|FL127492
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCAC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCAC
EST: gi|211331525|gb|FL127534.1|FL127534
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGG
EST: gi|32849990|gb|CD989671.1|CD989671
EST:     GCTGCATCTTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAGGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
genomic: GCTGCATC-TCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|211331526|gb|FL127535.1|FL127535
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGNTGCTGGCAAGG                         ACAAACTTGGTGGTGTCAACC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTG-TGGTGTCAACC
EST: gi|211331520|gb|FL127529.1|FL127529
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTG
EST: gi|31361689|gb|CD446046.1|CD446046
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCCGTTGATC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|211333687|gb|FL127545.1|FL127545
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTG
EST: gi|33101979|gb|CF061939.1|CF061939
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|211329365|gb|FL127518.1|FL127518
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCT
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCT
EST: gi|211331515|gb|FL127524.1|FL127524
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTC
EST: gi|211333685|gb|FL127543.1|FL127543
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTG
EST: gi|211327189|gb|FL127498.1|FL127498
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGAGGCACACCGCTGTTGATC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|31355054|gb|CD439411.1|CD439411
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTCATGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCCGTTGATC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|211335851|gb|FL127554.1|FL127554
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTGTCAA
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAA
EST: gi|211335856|gb|FL127559.1|FL127559
EST:     TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGNCGTTGCTGGCAAGG                         ACAAACTTGNGGNGTCAACCTCCTGCTCACTGATGCACACCGCTGGTGATC
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATC
EST: gi|211331516|gb|FL127525.1|FL127525
EST:     TGCTGCATCTCTTANCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGG                         ACAAACTTGTGGTG
genomic: TGCTGCATCTCTTAGCACTCTTCAGTCTCTTGAGGCCGTTGCTGGCAAGGgtaagcatta ... tgatgttcagACAAACTTGTGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatttgttccctttgtctgtacgttgttcagtaaccaaatacatgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATCTTGTCAATGAAACTAAGCTGGATGATGAGATTAAGTCATGGCTTGCATT
                              cagtaac  putative branch site (score: 2)
                                      aaatacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcattaaaggatatactgttgtttatttgttccctttgtctgtacgttgttcagtaaccaaatacatgatgttcagACAAACTTGTGGTGTCAACCTCCTGCTCACTGATGCACACCGCTGTTGATCTTGTCAATGAAACTAAGCTGGATGATGAGATTAAGTCATGGCTTGCATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA