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gtcagtcaattatcctgtccaacagttatgatttgcattagcttgttagttactattgaccttcataatattggctgattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGAAGAAACTGTAGCCAAGAAGAACGGGATGAATTTGAGAAGTACGATAAG
species | Zea mays |
transcript | GRMZM2G165535_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: NTTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|78118501|gb|DV536885.1|DV536885
genomic: -TTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|86471496|gb|DY237866.1|DY237866
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: TCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|40334667|gb|CK368737.1|CK368737
genomic: TCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|71449147|gb|DR830197.1|DR830197
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|71763428|gb|DR961365.1|DR961365
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|74245816|gb|DT653730.1|DT653730
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|71299719|gb|DR785870.1|DR785870
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|32919710|gb|CF024522.1|CF024522
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTATATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|14646044|gb|BI180233.1|BI180233
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|148947648|gb|EC893128.2|EC893128
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|71773498|gb|DR971398.1|DR971398
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|148943662|gb|EC888726.2|EC888726
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|6056459|gb|AW090849.1|AW090849
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|148947872|gb|EC893365.2|EC893365
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: TCATTCCATTGCTGACTTGGATATCCCAATTAAAAG GGGGACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|71299718|gb|DR785869.1|DR785869
genomic: TCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGEST: gi|76280414|gb|DV019982.1|DV019982
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
EST: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAG GGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
genomic: ATTAACTTCACTCTTCATTACATTGCTGACTTGGATATCCCAATTAAAAGgtcagtcaat ... gattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGG
tttgcattagcttgttagttactattgaccttcataatattggctgattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGAAGAAACTGTAGCCAAGAAGAACGGGATGAATTTGAGAAGTACGATAAG
ttcataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtcaattatcctgtccaacagttatgatttgcattagcttgttagttactattgaccttcataatattggctgattgctcagGGGTACATTCATAGAGTTCCGAAGTGGAATGATTAATGTATCTCCTATAGGAAGAAACTGTAGCCAAGAAGAACGGGATGAATTTGAGAAGTACGATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT