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gtatgtactacccataaatggttgtcttttttcagtatgccatttgattttcgttgactttgctaaacttttctttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAA
species | Zea mays |
transcript | GRMZM2G164956_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|18964493|gb|BM661037.1|BM661037
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGGCCGGAGGGTTTCTGCATCAGAGEST: gi|32802153|gb|CD954389.1|CD954389
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGAC-GAAGGATT-CTGCATCAGAG
EST: GGGCAGCAAGGGCACCAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|32928427|gb|CF033239.1|CF033239
genomic: -GGCAGCAAGGGCA-CAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|32846981|gb|CD986662.1|CD986662
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCCAGAGCEST: gi|19272557|gb|BM888813.1|BM888813
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATC-AGAGC
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|32929175|gb|CF033987.1|CF033987
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCGCTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|161407373|gb|DW042376.1|DW042376
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: TAGGCAGCAAGGGCACTACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|87153206|gb|DY397995.1|DY397995
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTEST: gi|32928455|gb|CF033267.1|CF033267
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
EST: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCA TGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
genomic: AAGGCAGCAAGGGCACAACTTATTCCAGATATTATCCGATGTTACAGCCAgtatgtacta ... tttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCT
ttttcagtatgccatttgattttcgttgactttgctaaacttttctttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAA
tgctaaa putative branch site (score: 103)
cttttctttgcttc CT-rich tract
atttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtactacccataaatggttgtcttttttcagtatgccatttgattttcgttgactttgctaaacttttctttgcttcagTGGAGGCCGAACCATTATCTTCACTGAGACGAAGGATTCTGCATCAGAGCTTTCTGGTTTGATTCCTGGATCCCGTGCCTTGCATGGAGATGTTGTGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG