Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcagtgctatgctcatgtacaataacctgtagtcgtgtcaagagaaaaggtttttcttaatggtcgaatcttgtaaaaaatattcgctatttcaatgtcttatgcacgtctgttctgtcctaccatttttgaacatatcaaaattaaattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG

Basic information

species Zea mays
transcript GRMZM2G164797_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164797_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 3'ss of exon 6
gtatgatcagtg-ctatgctcatgtacaataacctgtagtcgtgtcaagagaaaaggtttttc--ttaatggtcgaatcttgtaaaaaatattcgctatttcaatgtcttatgcacgtctgttctgtcctac-catttttgaacatatcaaaattaaattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG
||||||||| |  ||||| |   |||  ||||  | | | | || ||||||||||   |   |  | ||| | |  || ||||        ||  |||| |  | ||||| | ||  | | ||||   |||  |   ||||||  |  |    || | ||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||
gtatgatcaatatctatgtt---gtaggataattt-tgggcatgccaagagaaaaaaataaacgatgaatagactgattttgt--------ttttctatatggaagtcttgtacatttgtcttctactctatacgactttgaatttgactg--tttacttttgcagGCCCTTGACACTTTCAACACTGCAGTGGTTTCGCCCATATATTATACGATGTTTACATCCTTGACCATTTTGGCCAGTGTGATAATGTTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211415280|gb|FL246624.1|FL246624
EST:     TATCTGAACAAG                         GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
genomic: TATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: gi|67026855|gb|CO455604.1|CO455604
EST:     CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAG                         GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
genomic: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: gi|71301106|gb|DR786585.1|DR786585
EST:     CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAG                         GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
genomic: CATCCGTTGTAACCTTATGCATTGTAACACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
EST: gi|89760200|gb|DY688717.1|DY688717
EST:     CACAGATGAAATATTTGAACAAG                         GCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG
genomic: CACAGATGAACTATCTGAACAAGgtatgatcag ... aattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcacgtctgttctgtcctaccatttttgaacatatcaaaattaaattttgcagGCCCTCGACACATTCAACACTGCAGTTGTTTCACCCATATATTACACAATGTTTACATCCTTGACCATCTTGGCTAGTGTAATAATGTTCAAG
                       atttttgaacatatca  TA-rich tract