1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtagaaatgcatgattgttgcttgtggcatgaatacatcgcgatacttttcgatggttctgatggtgaaattatttttttgccttctgttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGAGCTGCAATGACACACCACAGACACCCGAGGGAAAAAACACCAACGCAA
species | Zea mays |
transcript | GRMZM2G163912_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGEST: gi|31350916|gb|CD435273.1|CD435273
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGEST: gi|211431802|gb|FL298783.1|FL298783
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCANAGTTTACAAGCTCAAGGAGAAAGEST: gi|32833725|gb|CD973403.1|CD973403
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGEST: gi|89757168|gb|DY686883.1|DY686883
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGEST: gi|211431801|gb|FL298782.1|FL298782
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAEST: gi|211431803|gb|FL298784.1|FL298784
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAA
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAATGAGAAAGEST: gi|32910548|gb|CF015360.1|CF015360
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGEST: gi|32836136|gb|CD975814.1|CD975814
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGEST: gi|32867073|gb|CF006755.1|CF006755
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
EST: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAG GTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
genomic: TGCCAAGCTTCTATCAAGAAGGCCCCCCACCAAAGGCTGAACTTAAGAAGgtaattccag ... ttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAG
tacttttcgatggttctgatggtgaaattatttttttgccttctgttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGAGCTGCAATGACACACCACAGACACCCGAGGGAAAAAACACCAACGCAA
ttctgat putative branch site (score: 3)
ttatttttttgccttc putative PPT
tgaaattattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtagaaatgcatgattgttgcttgtggcatgaatacatcgcgatacttttcgatggttctgatggtgaaattatttttttgccttctgttccgtcaagGTGCCTCCTACTCGTGCCAAATCACCAAAGTTTACAAGCTCAAGGAGAAAGAGCTGCAATGACACACCACAGACACCCGAGGGAAAAAACACCAACGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC