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gtaagtttggctaattttcaaatgctcatcatgtaaaatgatttgtaggtcttactttactttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAATTCGAAGAGCAAGCTTACTTCAACACATGATGTATTGAGAGGTTTGGTC
species | Zea mays |
transcript | GRMZM2G163233_T04 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAG TGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAAEST: gi|67023139|gb|CO451888.1|CO451888
genomic: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAGgtaagtttgg ... ttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAA
EST: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAG TGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAAEST: gi|71757599|gb|DR955536.1|DR955536
genomic: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAGgtaagtttgg ... ttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAA
EST: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAG TGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAAEST: gi|211460866|gb|FL363678.1|FL363678
genomic: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAGgtaagtttgg ... ttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAA
EST: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAG TGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAA
genomic: AACTGGTTTGTACAAGAAAAAAGTTGTAAGATATTGACTGCTATAATCAGgtaagtttgg ... ttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAA
ttcaaatgctcatcatgtaaaatgatttgtaggtcttactttactttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAATTCGAAGAGCAAGCTTACTTCAACACATGATGTATTGAGAGGTTTGGTC
tcttactttacttt CT-rich tract
atgtaaaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttggctaattttcaaatgctcatcatgtaaaatgatttgtaggtcttactttactttgactatagTGCACGACCAAAGCTTCGGAATGGCACACTTCCAAATGGAGATGCTTCGAATTCGAAGAGCAAGCTTACTTCAACACATGATGTATTGAGAGGTTTGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG