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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgcttgggatttaaacccacccaatcccactcaatccacatggattgagagctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAG

Basic information

species Zea mays
transcript GRMZM2G163159_T05
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163159_T05 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g48310.1 (Oryza sativa), 3'ss of exon 7
------------cttgcttgggatttaaacccacccaatcccactcaatccacatggattgagagctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAG
            |||||| |  ||  | |  |      |     |          ||   | |   | |  | |      ||||| | ||    || ||     || ||| ||  ||  || |||| |||||||||||   ||||||| |||| ||||||||||||||||| |  ||||||||||| || ||| |||| || ||||| ||||
gtctgaatcggtcttgctcgatatggatatgcttttttttttttttggggggggggggggggggatttagtagag-----ctaatcttgc----attctcctttttatcagGGA-GAGAGTTGTTCTGATGAACCCTGTCCTATATGCCTGGATTGCCCTGCTGCTGGTGAATACCTCCGGCGTTTACCGTGCCTGCATAAATTTCATAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148937964|gb|EC882197.2|EC882197
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|71760032|gb|DR957969.1|DR957969
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|86473704|gb|DY240074.1|DY240074
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|78093036|gb|DV521410.1|DV521410
EST:     GAGGCGCCTCTGACGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|78108412|gb|DV526830.1|DV526830
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|110214716|gb|EC896613.1|EC896613
EST:     GAGGCGCCTTTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
EST: gi|84970115|gb|DV171511.2|DV171511
EST:     GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCCCTATCAGTAATCGAG                         GGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT
genomic: GAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAGgtacgaagtc ... acttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgagagctaaccaaacaagccctaatttggctgcaatcctttcacttgtcaagGGTGAAGGTCGTTCCGATGAACCCTGCAATATATGCTTGGACTGCCCTGCTGCTGGTGATTCACTCCGGCGTTTGCCATGCATGCACAAGTTTCACAAAG
                                      tcctttcacttgtc  CT-rich tract
                        taattt  TA-rich tract