Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattgcttgtcccatggccccattttgaatgggatcctgttgacgtgttttttccttggtaacatatattctgactaatcagctttttatcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG

Basic information

species Zea mays
transcript GRMZM2G163159_T04
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78108412|gb|DV526830.1|DV526830
EST:     TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGA                         TGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
genomic: TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGAgtaagcattt ... tcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
EST: gi|84970115|gb|DV171511.2|DV171511
EST:     TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGA                         TGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
genomic: TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGAgtaagcattt ... tcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
EST: gi|110214716|gb|EC896613.1|EC896613
EST:     TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGA                         TGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
genomic: TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGAgtaagcattt ... tcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
EST: gi|78122235|gb|DV540619.1|DV540619
EST:     TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGA                         TGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG
genomic: TCTGAAGCATTTAGGAACTGCGAGGACACGCACTCTCCAGATTCGGATGAgtaagcattt ... tcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttttttccttggtaacatatattctgactaatcagctttttatcacttatagTGATGATTACGAGGACCAAATAGCGCTCGGCGTCGACAGCCAGCAAAGAGGCGCCTCTGATGATCAGATAAACAGCCTGCCACTATCAGTAATCGAG
                            gactaat  putative branch site (score: 2)
                                      ctttttatc  putative PPT
                                       tttttatcacttata  TA-rich tract