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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttacttctccctcctcatccgtgacctattaatatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA

Basic information

species Zea mays
transcript GRMZM2G162884_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os01g19870.1 (Oryza sativa), 3'ss of exon 7
gtagttacttctccctcctcatccgtgacctattaatatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
|||  | |||||||||            |  || | || |   ||   |  || | ||||| ||| ||||||| | || |   |||||||||| ||||||||||| || ||  |||| || ||||| || || ||| | || || ||||||||||| ||||||||||| |||||||| ||||||||
gtaagtgcttctccct----------agctaatgagtagt---aatcttccttgcttgccttataacagtatattgtgttctccagACGTCCCTGAGGGCTGTGTAATTATACGGGAGCACATCCCTATCACCAACCTCTTCACGTGCCTTTGGTTTAATGAAGTTGATCGCTTCACCTCCAGAGA

upper sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA15G08090.1 (Glycine max), 3'ss of exon 7
gtagttacttctccctcctcatccgtgacctatta-atatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
|||    ||   |  | |   ||| ||    || | ||    ||    ||| ||   | |   |  |   |     || | |  |||| || || || || ||||| ||| |  | || ||| | ||||| |  ||  | |||||||| ||||||||||||||||||||||| ||||| || || ||
gtaa--gctaaactttgcgtttccttgttagatgagatgcaactggttctggttcttttctcaaccttgatgg---ctaacttgcagATGTTCCTGAAGGGTGTGTAATAGTACGAGAGCATGTTCCCATCAGCAATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA

upper sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
lower sequence: GLYMA13G31260.1 (Glycine max), 3'ss of exon 7
gtagtt---acttc-tccctcctcatccg-tgacctattaatatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
|||      ||||| |   ||||  |  | |||  |   | |  ||||    |  || |  | |   |  |   |     || |||  |||| || || || || ||||| ||| |  | || ||| | ||||| |   |  | |||||||| ||||||||||||||||||||||| ||||| || || ||
gtaagctaaacttcatgtttccttgttggatgagatgcaactggttctggttcatttcattt-ctcaaccttgatgg---ctaatttgcagATGTTCCTGAAGGATGTGTAATAGTACGAGAGCATGTTCCCATTAGTGATCTTTTTACATGTCTTTGGTTCAATGAAGTTGACCGATTCACTTCTAGGGA

upper sequence: GRMZM5G891056_T01 (Zea mays), 3'ss of exon 7
lower sequence: Vv19s0014g02710.t01 (Vitis vinifera), 3'ss of exon 7
gtagttacttctccctcctcatccgtgacctat-taatatttctaacactgtttacctgcctgatatcagtatactctgattg--acagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
   || | |      |||| ||  ||    | | |  |||||   |   ||       |  |  |  |  |||       |||   |||| || || || || || |||||  | | ||||||||||||||| |||||  | ||||| || || ||||||||||||||||| ||||| || ||||| ||
---gtaagtgtgtgatccttatgtgtattgtgtgtgttattttgtatcttgaaattgaggtttttggctttatgtctgagttgctgcagATGTTCCTGAAGGTTGCGTGATTGTAAAGGAACATATCCCCATTACAAATCTTTTTACCTGTCTATGGTTCAATGAAGTTGATCGCTTTACTTCCAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaatatttctaacactgtttacctgcctgatatcagtatactctgattgacagACGTCCCGGAGGGCTGTGTGATAATTAGGGAACATATCCCCATAACAAACTTGTTTACATGCCTTTGGTTCAATGAAGTTGACCGCTTCACGTCCAGAGA
     tatttctaa  TA-rich tract