1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tctgaacttaatgtttgtccccgaaaattatcttgtaaccttgtctgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
species | Zea mays |
transcript | GRMZM2G162409_T05 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAG ATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
genomic: CACTTAGGCTCCAGTTGGAACTTCAAAAGCGGCTTCATGAACAGCTTGAGgtactattac ... tggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAG
tgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
atcttac putative branch site (score: 82)
aattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgaacttaatgtttgtccccgaaaattatcttgtaaccttgtctgcagcatactgtatcttacaaagttcatcgctattgctgttccatggaatttagATACAAAGAAGTTTGCAGCTAAGAATCGAGGAACAAGGGAAGTGTCTTCAGATGATGCTAGAGCAGCAGTGCATACCCGGGGCAGAAAAGGCGCAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - ctgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctattg