1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agtaccttttcatcgtagccttttttgccatcttaaattatttacatactatatatattcattattttttgttaattagttgaagcatttctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATGACCCCTCAGATCAGGAACTGATCGAGTTGCTCCCGTTCTTGGAGAGCC
species | Zea mays |
transcript | GRMZM2G162347_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGGTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|78179711|gb|DV550084.1|DV550084
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|211029103|gb|FL471471.1|FL471471
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32832801|gb|CD972479.1|CD972479
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|6993978|gb|AW453192.1|AW453192
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|71533678|gb|DR784437.1|DR784437
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|116825971|gb|EC869721.1|EC869721
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGGAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTATGATEST: gi|32833646|gb|CD973324.1|CD973324
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32832678|gb|CD972356.1|CD972356
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|6865263|gb|AW360613.1|AW360613
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGCCAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|78074154|gb|DV502588.1|DV502588
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32831928|gb|CD971606.1|CD971606
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: GATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCCCAG GTTTTCCAGTTGCAAGTGGATACCGGCATACCGATTAAGAGCTGGTTTGATEST: gi|78108659|gb|DV527077.1|DV527077
genomic: GATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32835189|gb|CD974867.1|CD974867
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32835374|gb|CD975052.1|CD975052
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATEST: gi|32835136|gb|CD974814.1|CD974814
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCATGTGGATAACGGCATACCGATTAAGAGCTGGNTTGATEST: gi|211362627|gb|FL463911.1|FL463911
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
EST: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAG GTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
genomic: TTCTGGGGATCGACTTGGCAAAAGTTGCAATAGTTGACAATACTCCACAGgtacaatccc ... ctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGAT
atactatatatattcattattttttgttaattagttgaagcatttctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATGACCCCTCAGATCAGGAACTGATCGAGTTGCTCCCGTTCTTGGAGAGCC
tgttaat putative branch site (score: 102)
tttctttatct putative PPT
atatatattcattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtaccttttcatcgtagccttttttgccatcttaaattatttacatactatatatattcattattttttgttaattagttgaagcatttctttatctagGTTTTCCAGTTGCAAGTGGATAACGGCATACCGATTAAGAGCTGGTTTGATGACCCCTCAGATCAGGAACTGATCGAGTTGCTCCCGTTCTTGGAGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - -tgccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaagca