1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacttaatttacaatttgcttctgagatgtcatctactgtttccatccttagcaaacttaacatgcatatttttttcttcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTACCATCACTATCTGAGGAATACTTCCATCTAGTGAGCCAGAAGCTTCTTA
species | Zea mays |
transcript | GRMZM2G162251_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAG GTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCTTCACTAEST: gi|67034972|gb|CO463505.1|CO463505
genomic: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAGgtacttaatt ... tcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTA
EST: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAG GTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTAEST: gi|50326999|gb|CO522125.1|CO522125
genomic: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAGgtacttaatt ... tcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTA
EST: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAG GTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTAEST: gi|211076051|gb|FL473597.1|FL473597
genomic: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAGgtacttaatt ... tcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTA
EST: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAG GTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTA
genomic: AAATGTCGCTGCCTGCTTTGCCTGTCTCGCCGAAATCAGAAAGCTCAGgtacttaatt ... tcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTA
ctactgtttccatccttagcaaacttaacatgcatatttttttcttcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTACCATCACTATCTGAGGAATACTTCCATCTAGTGAGCCAGAAGCTTCTTA
acttaac putative branch site (score: 18)
tatttttttcttcgcc putative PPT
atatttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaatttacaatttgcttctgagatgtcatctactgtttccatccttagcaaacttaacatgcatatttttttcttcgcccgtagGTCCCTCCAGAACTGGGATCGGCGTTTTGTTGCTGCTTGTATTCCTCACTACCATCACTATCTGAGGAATACTTCCATCTAGTGAGCCAGAAGCTTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC