1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaatctgctgggcccccttttgttgtaacataactgttacctcttttttttcaagaaacaaaccccgatggtaagagacatttgcttcttaatatttcagGCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACTGGGATCCTTGCCAATAAG
species | Zea mays |
transcript | GRMZM2G161649_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATG GCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACEST: gi|33100060|gb|CF060020.1|CF060020
genomic: ACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagctagc ... aatatttcagGCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATAC
EST: TTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATG GCAGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACTGGGATCC
genomic: TTGGTGACTACCATCATTCTACTCGCATCGCTTTTGTGGAATTTGTGATGgttagctagc ... aatatttcagGCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACTGGGATCC
ttttttcaagaaacaaaccccgatggtaagagacatttgcttcttaatatttcagGCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACTGGGATCCTTGCCAATAAG
tcttaat putative branch site (score: 121)
cttctta CT-rich tract
ttcttaatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatctgctgggcccccttttgttgtaacataactgttacctcttttttttcaagaaacaaaccccgatggtaagagacatttgcttcttaatatttcagGCGGAAAGTGCTACCGCTGCCCTGAACTGCAGTGGCGTGATACTGGGATCCTTGCCAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- -tctgctg
- - - - - - - - - tttgttg
- - - - - - - - - - - - - aacataa
- - - - - - - - - - - - - - - - -ctgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttct