1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aagtgtggcatagctagctacgaatcaaacaggccctgggtttttctcgtatgcttactagtaatgtggtcgtagattcttactcccagttgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACCCTCGCAAGTCAGGTTTTGTGTTCGGCAAATTGAAGTGCTTGACAGCAA
species | Zea mays |
transcript | GRMZM2G161553_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG ATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACEST: gi|211059354|gb|FL475173.1|FL475173
genomic: GGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAGgtaatgtcac ... tgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG ATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACEST: gi|211409079|gb|FL206579.1|FL206579
genomic: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAGgtaatgtcac ... tgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG ATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACEST: gi|211280280|gb|FL480361.1|FL480361
genomic: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAGgtaatgtcac ... tgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAAC
EST: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAG ATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAAC
genomic: AGAAGCTTGTGGCAATGCGGGAAGACATTCCAAGAAAGGAAGCCAAGGAGgtaatgtcac ... tgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAAC
ctcgtatgcttactagtaatgtggtcgtagattcttactcccagttgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACCCTCGCAAGTCAGGTTTTGTGTTCGGCAAATTGAAGTGCTTGACAGCAA
ttcttac putative branch site (score: 19)
ttgtctctt putative PPT
tagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtgtggcatagctagctacgaatcaaacaggccctgggtttttctcgtatgcttactagtaatgtggtcgtagattcttactcccagttgtctcttagATTGTACAAGAATGCAAAGAGATATACGAGAACTCGCTCGTGGATGGCAACCCTCGCAAGTCAGGTTTTGTGTTCGGCAAATTGAAGTGCTTGACAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - -ggccctg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttac