1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatgaattttggaccttttatgattattcattagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAGAGAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAAC
species | Zea mays |
transcript | GRMZM2G161337_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|60401378|gb|DN234185.1|DN234185
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|33099478|gb|CF059438.1|CF059438
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|31364516|gb|CD448871.1|CD448871
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|5901211|gb|AW042311.1|AW042311
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|60400588|gb|DN233395.1|DN233395
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|116816802|gb|EC859574.1|EC859574
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|33093179|gb|CF053173.1|CF053173
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|71448131|gb|DR829181.1|DR829181
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|7238168|gb|AW573390.1|AW573390
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGNGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|211345789|gb|FL266262.1|FL266262
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|32836931|gb|CD976609.1|CD976609
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|67024314|gb|CO453063.1|CO453063
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAEST: gi|211282582|gb|FL175928.1|FL175928
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
EST: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAG GGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
genomic: GCTGTGTATTGGTTGCGTCTAGTCCTGAAATTCTTACACGAGTCAGTAAGgtatatgaat ... atattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACA
attagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAGAGAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAAC
tattctc CT-rich tract
acatttttttaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgaattttggaccttttatgattattcattagattataaaattgtcttctcacaaatgtgcacatttttttaatattctcagGGGAAGATTATTAATCGACCACTTGCTGGAACTGTTCGAAGGGGCAAGACAGAGAAGGAAGATCAAATGCAAGAGCAACAACTGTTAAGTGATGAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA