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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttcattgattcctcagttgtttcaggttgtaattgatcaactaaattaaggcaagttcagctgatcttctgtgcatgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAG

Basic information

species Zea mays
transcript GRMZM2G160569_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160569_T03 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g44070.2 (Oryza sativa), 3'ss of exon 7
gtgtttcattgattcctcagttgtttcaggttgtaattgatcaactaaattaaggcaagttcagctgatcttctgtgcatg----atg-cagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAG
||  |    || |  | ||| |   | |  || |||    |||| |     ||| | || |  ||||| |  ||||| |||    ||| |||| |||||||| || ||||| ||||| |||||||||||||| |   ||||||| || ||||| || |||||||| ||||| || |||||||| || |||||
gtactgggctgttctcccagatccgtgaa-ttataaactgtcaatt----caagtctagattggctgaccccctgtgtatgtatgatggcagGTTTCAGGAATCAAATGCTCGATGCGGTGAGGGGTTTCTCCGGCGCAAGGCAGAACGGTCTTTTTATCAACTCCTGTTTCGCACATTGCCAAAGTGAGAG

upper sequence: GRMZM2G160569_T03 (Zea mays), 3'ss of exon 6
lower sequence: Vv05s0020g01110.t01 (Vitis vinifera), 3'ss of exon 10
---------gtgtttcattgattcctcagttgtttcaggttgtaat--tga--tcaact---aaattaaggcaagttcagctgatcttctgtgcatgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAG
          |   |  || | | |    | | || | | |  |||  ||   |||| |   |  || |      |     | ||  | |       |  |||  ||||| || || |||||  |||| || || || ||||| |  || |    |||||| || ||||| |||||||||||||||||||| ||||  |||||
gtggtttgcttagcttgtttacttcctcctggctttatgcttcaatcctggcttcaattttgatcttgatatttatgagtttcattcttttcatgcaaaacagATTTCAGAAAACAAATGCTAAATGCTGTAAGTGGCTTCTCAGGGTCCAAAAGAAATGGGCTATTCATAAACTCATGTTTTGCTCATTGTCAGACAGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31998134|gb|CD661943.1|CD661943
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|148953387|gb|EE152881.2|EE152881
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTTTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|91056470|gb|EB166888.1|EB166888
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|60400656|gb|DN233463.1|DN233463
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|4887514|gb|AI677613.1|AI677613
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|5058593|gb|AI737069.1|AI737069
EST:     CAGCTCCAGTTTTTGCAAG                         GGTTCAGGANCCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: CAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|211266712|gb|FL294975.1|FL294975
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|101383816|gb|EB813963.1|EB813963
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTTTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|91051274|gb|EB161692.1|EB161692
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|31356908|gb|CD441265.1|CD441265
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|86471748|gb|DY238118.1|DY238118
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|93016716|gb|EB642236.1|EB642236
EST:     TAGGGCGAAGCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|149028341|gb|EE154630.2|EE154630
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|78025651|gb|DV494038.1|DV494038
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|149009226|gb|EE153857.2|EE153857
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGNNNNNNNGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|149101141|gb|EE187249.2|EE187249
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|76932739|gb|DV173141.1|DV173141
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
EST: gi|60401537|gb|DN234344.1|DN234344
EST:     TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAG                         GGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC
genomic: TAGGACGAACCATGCCTTCTGTAATAGCAACCAGCTCCAGTTTTTGCAAGgtgtttcatt ... catgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaattgatcaactaaattaaggcaagttcagctgatcttctgtgcatgatgcagGGTTCAGGAACCAGATGCTTGATGCCGTGAGGGGTTTCTCTGCATCAAGGCAAAATGGTCTGTTCATCAACTCATGTTTTGCTCATTGCCAGAGCGAGAG
       atcaactaaattaa  TA-rich tract