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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggagaataacaggcctcggtgtattcttgaaaaaaaataaaactagggtctcagtacagaaactacaatgcatttaccatttcttctatgcctttctttatgattttttccagGAGCTCTGAAAGTACAAGCAACTTGCCAAAGCTTAGAAGAAATGCATCTAGTTCCTCTGATATGAGTAGCATGGCTTCACAAGGTCCTTCAACTAATACA

Basic information

species Zea mays
transcript GRMZM2G159307_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159307_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g12660.1 (Oryza sativa), 3'ss of exon 6
gtgggagaataacaggcctcggtgtattcttgaaaaaaaataaaactagggtctcagtacagaaactacaatgcatttaccatttcttctatgcctttctttatgattttttccagGAGCTCTGAAAGTACAAGCAACTTGCCAAAGCTTAGAAGAAATGCATCTAGTTCCTCTGATATGAGTAGCATGGCTTCACAAGGTCCTTCAACTAATACA
                           |  || ||||   |    ||  |  |    |||||||||| |||  ||||  |   |  |  ||||| |||||||||| | |||| |||||||||||||||||| |||| ||| || ||||||| ||| ||||| || | ||| ||||||||||||||  |||| |||||||| ||| ||| |||| ||
--------------------------gtactggaaaattgtgcttctgtgaacctgttacagaaactgcaaatcattggctgctgttgatatgc-tttctttatg-tattttgcagGAGCTCTGAAAGTACGAGCAGCTTCCCGAAGCTTAAAAGGAATGCCTCAACTTCATCTGATATGAGTAGTCTGGCATCACAAGGCCCTCCAAATAATCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaactacaatgcatttaccatttcttctatgcctttctttatgattttttccagGAGCTCTGAAAGTACAAGCAACTTGCCAAAGCTTAGAAGAAATGCATCTAGTTCCTCTGATATGAGTAGCATGGCTTCACAAGGTCCTTCAACTAATACA
                                cctttctttatgattt  CT-rich tract
                                  tttctttatgattttt  TA-rich tract