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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgctctgtctatctatccatttcatcgctggaaattcccatgccctttcatagtacgcctgtgaaatgctcgctgcttttctattggtttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCTACCTGAACACCTACGATGATCGCACCATCCGCTACCCCGACCCGCTCA

Basic information

species Zea mays
transcript GRMZM2G158584_T04
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103360|gb|EE288742.2|EE288742
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|71431329|gb|DR812379.1|DR812379
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|148939981|gb|EC884712.2|EC884712
EST:     GCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTT-GGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|30032065|gb|CB833916.1|CB833916
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|29544094|gb|CB604474.1|CB604474
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|149028385|gb|EE154636.2|EE154636
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|29544577|gb|CB604957.1|CB604957
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|71419899|gb|DR804931.1|DR804931
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|211145652|gb|FL480707.1|FL480707
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|30087079|gb|CB885287.1|CB885287
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
EST: gi|78116857|gb|DV535244.1|DV535244
EST:     GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTT                         TTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC
genomic: GGCTCAATGCGCCCAAGCATTGGATGCTCGACAAGCTTGGCGGAGCTTTTgtaagtaaaa ... ttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttcatagtacgcctgtgaaatgctcgctgcttttctattggtttgtgtgcagTTCATGCTCTGCAAGGTGAGGTCTGTTCAGTTTGGCCAGAAAGGTATCCCCTACCTGAACACCTACGATGATCGCACCATCCGCTACCCCGACCCGCTCA
                                 ttttctatt  TA-rich tract