1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctcgttgtattagaggagaatttgcttcgcttgttgttttgttttagtttgtaatgtctgtatttgctaattgatgctgacttatatattattttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTATTTTGCTGAAGGTGCTATAAATGCTGCAAAGAAAAG
species | Zea mays |
transcript | GRMZM2G158261_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTEST: gi|50333301|gb|CO528427.1|CO528427
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTEST: gi|5268759|gb|AI770723.1|AI770723
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTEST: gi|76293168|gb|DV032736.1|DV032736
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTEST: gi|76017214|gb|DT944384.1|DT944384
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTEST: gi|32909407|gb|CF014219.1|CF014219
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGEST: gi|58029903|gb|CX725330.1|CX725330
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAG
EST: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAG GCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
genomic: TGTGCAGTCACATCCAGTACCTGTTCATCGTTTAGGGAGGGGAACATCAGgtttgtttct ... attttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTT
agtttgtaatgtctgtatttgctaattgatgctgacttatatattattttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTATTTTGCTGAAGGTGCTATAAATGCTGCAAAGAAAAG
tgctgac putative branch site (score: 103)
ttatttt putative PPT
tgacttatatattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcgttgtattagaggagaatttgcttcgcttgttgttttgttttagtttgtaatgtctgtatttgctaattgatgctgacttatatattattttgctagGCCTCCTGCTTTGTGCCAAGACAAAAGTTGCCAAAGTTCGACTTGCATCTTATTTTGCTGAAGGTGCTATAAATGCTGCAAAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - tttgctt
- - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -atgtctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctg