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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttacaatatatgctatgacagacacaatattgtttcctcaaagccaacactcttgttttcagcattaactaaaataacctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG

Basic information

species Zea mays
transcript GRMZM2G157836_T07
intron # 6
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157836_T01 (Zea mays), 3'ss of exon 7
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 3'ss of exon 5
gtatccttacaatatatgctatgac---agacacaatattgtttcctc-aaagccaacactcttgttttcagcattaactaaaataacctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG
|||| ||  | | | ||    || |   |||||  |||||||  | |  | ||   ||    || ||||   || | | |  |  || | |||||||||||||||||| ||||| || ||||| ||||||||| | || |||||||| || || ||||| |||||||| |||
gtatgctatcgaaacattaagtgtcttgagacaatatattgtgccttttagagtttactgaatttttttttccactga-tggatcaatcacagATATGATATAGTTGTAGATGCCACGGACAATCTTCCTACTCGATACATGATCAGTGACTGTTGTGTGTTGCTGAATAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttcctcaaagccaacactcttgttttcagcattaactaaaataacctcagATATGATATAGTTGTTGATGCAACTGACAACCTTCCTACTAGGTATATGATCAGCGATTGCTGTGTTTTGCTGAACAAG
 agcattaac  putative branch site 
                                   attaactaaaataa  TA-rich tract