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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtcctaaacaacttatattttgaactgaagtactacaattgtgaatgcatatatttttctttcctctttggtgtcataaaattcctgcctcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC

Basic information

species Zea mays
transcript GRMZM2G157316_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157316_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g16330.1 (Oryza sativa), 3'ss of exon 6
tgtcctaaacaacttatattttgaactgaagtactacaattgtgaatgcatatat-ttttctttcctctttggtgtcataaa-attcctgcctcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC
  |  | |  |   ||| |  |   ||  ||   |  |     |  |  | | ||   |  ||| || | ||  ||  |||  |||  |||   |||||||| | |||||||||||| |||||||||| ||||||  |||||| |||||  | ||| |  ||||| | |||||||||||||| || |||||||     || |
--tatttattattatatttccttgtctttagagtttgaccaaaggctcaaaacatgcctatttttctgtctgcagttctaactatttatgctcgttgtacagATGCCACAGGTTATTGCATCATTTTTCGCAAGAATTTTCGCACCTTCTTCGGGAGGTTCATCTAGGCCCTCCAGGAGTCTGGTCGGAAACATGAGTTCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282775|gb|DV022343.1|DV022343
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTC
EST: gi|74240575|gb|DT648489.1|DT648489
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTT
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTT
EST: gi|5804682|gb|AI979652.1|AI979652
EST:     TTGCTGGTTCTCTCTATGGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|18172562|gb|BM347950.1|BM347950
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|86470246|gb|DY236616.1|DY236616
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|78076078|gb|DV504512.1|DV504512
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGNCA-GATATTTCGCCCCTTCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTG-CAAGATATTTCGCCCCTTCC
EST: gi|211167973|gb|FL398205.1|FL398205
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|74237514|gb|DT645428.1|DT645428
EST:     TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGAATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCC
genomic: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAG-ATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCC
EST: gi|76281473|gb|DV021041.1|DV021041
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71759350|gb|DR957287.1|DR957287
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|76017527|gb|DT944697.1|DT944697
EST:     TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCCGCA-GATGAAG                         CTTCCACAGGTTATTTCATCANNNNNNNGCAAGATATTTCGCCCCCTTCCC
genomic: TGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCC-GCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTT-GCAAGATATTTCGCCCC-TTCCC
EST: gi|71327755|gb|DR800511.1|DR800511
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|86470086|gb|DY236456.1|DY236456
EST:     GGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: GGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|78076077|gb|DV504511.1|DV504511
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|28985536|gb|CB350690.1|CB350690
EST:     CATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: CATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71450334|gb|DR831384.1|DR831384
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|149046880|gb|EE048091.2|EE048091
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTT
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTT
EST: gi|28986640|gb|CB351236.1|CB351236
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|6020337|gb|AW065265.1|AW065265
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|78022528|gb|DV490915.1|DV490915
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|93013208|gb|EB638728.1|EB638728
EST:     AAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: AAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|110532788|gb|EE036968.1|EE036968
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|148958569|gb|EC904813.2|EC904813
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTTATT-CATCATTTTTTGCAAGATATTTCGCCCCCTTCCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTT-ATTTCATCATTTTTTGCAAGATATTTCGCCCC-TTCCC
EST: gi|45568649|gb|CK986167.1|CK986167
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|76282774|gb|DV022342.1|DV022342
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71450335|gb|DR831385.1|DR831385
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGT-ATTTCATCATTTTT
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTT
EST: gi|71433037|gb|DR814087.1|DR814087
EST:     TTGCGGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71417979|gb|DR804274.1|DR804274
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|86470930|gb|DY237300.1|DY237300
EST:     TTGCTGGTTCTCTCTATCGTTTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71417992|gb|DR804275.1|DR804275
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTTCCCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTT-CCCC
EST: gi|148999920|gb|EE036969.2|EE036969
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTTCGCCCCCTTCCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTT-CGCCCC-TTCCC
EST: gi|31354976|gb|CD439333.1|CD439333
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCC
EST: gi|111189834|gb|EE287970.1|EE287970
EST:     TTGCGGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|76281474|gb|DV021042.1|DV021042
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCTCCC
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTC-CCC
EST: gi|71305917|gb|DR789089.1|DR789089
EST:     GCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: GCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|76914064|gb|DV165396.1|DV165396
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|71438421|gb|DR819471.1|DR819471
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
EST: gi|76017526|gb|DT944696.1|DT944696
EST:     TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAG                         CTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA
genomic: TTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 39

TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 42

TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 54

TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 46

TCTTTTATCTTCTTGGAAGCGCTCCCTTATTCCTGGTATATTTGGTCTGGTTGCTGGTTCTCTCTATCGTCTAAATGTGCTCGGCATCCGCAAGATGAAGgttactaaac ... tcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcatatatttttctttcctctttggtgtcataaaattcctgcctcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC
                                     ttcctgcctcttgt  CT-rich tract
     tatatttttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtcctaaacaacttatattttgaactgaagtactacaattgtgaatgcatatatttttctttcctctttggtgtcataaaattcctgcctcttgtacagCTTCCACAGGTTATTTCATCATTTTTTGCAAGATATTTCGCCCCTTCCCCAGGAAGCACATCTCGCCCCTCCAGGAGTCTTGTTGGAAACACACCGTCCC

- - - -aacaact
- - - - - - - - - - -tgaactg
- - - - - - - - - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctgcc