1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgatggggcttatgacgacactacattcgtgatgaaatcgctattattatcatacagtacggttaccgtttttgcgtgctttacatctagcttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTACTATGTCTTGAATCAG
species | Zea mays |
transcript | GRMZM2G157263_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAAATGTCACGTATGAGGATATTCTTCTGAAG GAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTACEST: gi|5847285|gb|AW000364.1|AW000364
genomic: CAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcct ... cttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTAC
EST: AAGTACACTTAATCTATGCAAATGTCACGTATGANGATATTCTTCTGAAG GAAGAACTTGACGGCATEST: gi|6056601|gb|AW091006.1|AW091006
genomic: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcct ... cttgatgcagGAAGAACTTGACGGCAT
EST: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAG GAAGAACTTGACGGCATGGCCAAAAACTATCCCGATCGTTTCAAGATCTACEST: gi|33101380|gb|CF061340.1|CF061340
genomic: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcct ... cttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTAC
EST: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAG GAAGAACTTGACGGCATGGCCAAAAACTATCCCGATCGTTTCAAGATCTACEST: gi|6056591|gb|AW090996.1|AW090996
genomic: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcct ... cttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTAC
EST: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAG GAAGAACTTGACGGCATGGCCAAAAACTATCCCGATCGTTTCAAGATCTAC
genomic: AAGTACACTTAATCTATGCAAATGTCACGTATGAGGATATTCTTCTGAAGgtatatgcct ... cttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTAC
attatcatacagtacggttaccgtttttgcgtgctttacatctagcttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTACTATGTCTTGAATCAG
gcttgat putative branch site (score: 188)
tttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatggggcttatgacgacactacattcgtgatgaaatcgctattattatcatacagtacggttaccgtttttgcgtgctttacatctagcttgatgcagGAAGAACTTGACGGCATGGCCAAAAACTATCCTGATCGTTTCAAGATCTACTATGTCTTGAATCAG
tgatggg
- - - -gcttatg
- - - - - - - - - cactaca
- - - - - - - - - - - - - - -tgatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - catacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgtgct