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...caatatagcatttatttttgtcttgttgacatatattgtttgtaatcctcatcgtttcctttgtagttaatctttgttgcacactttcttcaattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG
species | Zea mays |
transcript | GRMZM2G156800_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|26559130|gb|CA831365.1|CA831365
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGAGAAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCATCCTAATCTTTCATTGAAGGGAACACCATACTGGATEST: gi|22542085|gb|BU092523.1|BU092523
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGC-TCCTAATCTTTCATTGAAGGGAACACCATACTGGAT
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|22473422|gb|BU037902.1|BU037902
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|50338068|gb|CO533194.1|CO533194
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|60345120|gb|DN212093.1|DN212093
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|87157200|gb|DY401989.1|DY401989
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|26558715|gb|CA830950.1|CA830950
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|6031429|gb|AW076331.1|AW076331
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|211321744|gb|FL182473.1|FL182473
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGEST: gi|211321747|gb|FL182476.1|FL182476
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATG
EST: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCAT TTGAGTACYGCAGCTCCCTAATCTTTCATTGAAGGGAACACCATACTGGAT
genomic: TTGATATTAACGGTGTAGTGAAATTGGCTGACTTCGGAATGGCAAAGCATgtgagtccaa ... caattttcagTTGAGTACTGCAGCT-CCTAATCTTTCATTGAAGGGAACACCATACTGGAT
tcctcatcgtttcctttgtagttaatctttgttgcacactttcttcaattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG
agttaat putative branch site (score: 105)
ctttcttcaattttc putative PPT
ttaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatatagcatttatttttgtcttgttgacatatattgtttgtaatcctcatcgtttcctttgtagttaatctttgttgcacactttcttcaattttcagTTGAGTACTGCAGCTCCTAATCTTTCATTGAAGGGAACACCATACTGGATGGCTCCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca