1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ccatagcccataagtaaactcaggctgtttgtcactttcaaatgttattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagcagAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCTATC
species | Zea mays |
transcript | GRMZM2G156251_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGCTGGACCAGCACCATAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|12047004|gb|BF729143.1|BF729143
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCATAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|12047004|gb|BF729143.1|BF729143
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCATAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|8102733|gb|AW927375.1|AW927375
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|8102733|gb|AW927375.1|AW927375
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|8102733|gb|AW927375.1|AW927375
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|78108482|gb|DV526900.1|DV526900
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: AGCAAACTTAGACC AEST: gi|78108482|gb|DV526900.1|DV526900
genomic: AGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: AGCAAACTTAGACC AEST: gi|78108482|gb|DV526900.1|DV526900
genomic: AGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: AGCAAACTTAGACC AEST: gi|8102732|gb|AW927374.1|AW927374
genomic: AGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|8102732|gb|AW927374.1|AW927374
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|8102732|gb|AW927374.1|AW927374
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|60342301|gb|DN209274.1|DN209274
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|60342301|gb|DN209274.1|DN209274
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|60342301|gb|DN209274.1|DN209274
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|78180467|gb|DV550840.1|DV550840
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|78180467|gb|DV550840.1|DV550840
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|78180467|gb|DV550840.1|DV550840
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|32803335|gb|CD955571.1|CD955571
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CEST: gi|32803335|gb|CD955571.1|CD955571
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CEST: gi|89755061|gb|DY685623.1|DY685623
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|89755061|gb|DY685623.1|DY685623
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|89755061|gb|DY685623.1|DY685623
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|31353665|gb|CD438022.1|CD438022
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|31353665|gb|CD438022.1|CD438022
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|31353665|gb|CD438022.1|CD438022
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|71767771|gb|DR965708.1|DR965708
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|71767771|gb|DR965708.1|DR965708
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC AEST: gi|71767771|gb|DR965708.1|DR965708
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACC A
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGA-Cgtaagtcaaa ... ttaacagcag-
tattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagcagAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCTATC
tattaac putative branch site (score: 35)
tctcttatt CT-rich tract
aaatctcttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatagcccataagtaaactcaggctgtttgtcactttcaaatgttattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagcagAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - -aaactca
- - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatactg