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...gtgccatagcccataagtaaactcaggctgtttgtcactttcaaatgttattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCT
species | Zea mays |
transcript | GRMZM2G156251_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGGCTGGACCAGCACCATAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|89755061|gb|DY685623.1|DY685623
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|31353665|gb|CD438022.1|CD438022
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|78180467|gb|DV550840.1|DV550840
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|8102733|gb|AW927375.1|AW927375
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|60342301|gb|DN209274.1|DN209274
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|32803335|gb|CD955571.1|CD955571
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|8102732|gb|AW927374.1|AW927374
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|78108482|gb|DV526900.1|DV526900
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: AGCAAACTTAGAC CAGAGGCGACGAATGATAATTCATGCAAATGCAAAGAGTAAAAGTGAGAAGEST: gi|71767771|gb|DR965708.1|DR965708
genomic: AGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
EST: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGAC CAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
genomic: GGGCTGGACCAGCACCAGAAGCTAATGCAGAGATTCAAGCAAACTTAGACgtaagtcaaa ... ttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAG
tgttattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCT
gcttaat putative branch site (score: 246)
tctcttatt putative PPT
aaatctcttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccatagcccataagtaaactcaggctgtttgtcactttcaaatgttattgcttaatatgatactgaatattgaggtttccaaatctcttattaacagCAGAGGCGACGAATGATAACTCATGCAAATGCAAAGAGTAAAAGTGAGAAGTTTCCTCCTCCGCATCAGGATGGAGGTACGGGTAATCCGCTTGGATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-tgccata
- - - - - - - - - aaactca
- - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - -tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg