1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...actaaaaagacaaatattgtgaaatggtggtagtagtgcactactttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
species | Zea mays |
transcript | GRMZM2G155962_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAGAAGGCATTCTCTTCATTTTTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCAEST: gi|88748896|gb|DY533037.1|DY533037
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
EST: AAGAAGAGAAGGCATTCTTTTCATTTTTAAGCTTATCCAGATTCCCACAG GTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
genomic: AAGAAGAGAAGGCATTCTCTTCATTTCTAAGCTTATCCAGATTCCCACAGgtaatgtatg ... actttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCA
ttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
ctctaaa putative branch site (score: 3)
ttacttt putative PPT
attactttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaaaaagacaaatattgtgaaatggtggtagtagtgcactactttgtgctgtggcatcactatacttgctctaaagccaagatgcattactttaacagGTTTATGTCAAATACAGTGCTCTTTTCCGCATAACAAGAGAAGCATATCCATATGAAGACACTGCTCAGCTTCTTTCCAGTGTGATATCTCATTATGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT