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gtaagaataattacatgcttctttgttgtgatcagagattctttgacttcgatacatgatttcctgaatattactataagaatcacagctgattttattcttgtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG
species | Zea mays |
transcript | GRMZM2G155729_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAA GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGAEST: gi|74243750|gb|DT651664.1|DT651664
genomic: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAAgtaagaataa ... gtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
EST: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAA GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGAEST: gi|211407698|gb|FL252163.1|FL252163
genomic: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAAgtaagaataa ... gtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
EST: CAGATATTTTGGGTTTGGAGCCTAATCAA GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGAEST: gi|211407699|gb|FL252164.1|FL252164
genomic: CAGATATTTT-GGTTTGGAGCCTAATCAAgtaagaataa ... gtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
EST: CAGATATTTTGGTTTGGAGCCTAATCAA GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGAEST: gi|148942820|gb|EC887853.2|EC887853
genomic: CAGATATTTTGGTTTGGAGCCTAATCAAgtaagaataa ... gtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
EST: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAA GTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
genomic: CCCGAAAGTTCTTTGAAACCCACAGATATTTTGGTTTGGAGCCTAATCAAgtaagaataa ... gtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGA
gatttcctgaatattactataagaatcacagctgattttattcttgtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG
agctgat putative branch site (score: 50)
ttttattcttgtcttc CT-rich tract
aatattactataagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaataattacatgcttctttgttgtgatcagagattctttgacttcgatacatgatttcctgaatattactataagaatcacagctgattttattcttgtcttcgcagGTGACATTTTTCCAACAGGGTACTATTCCATGTGTATCTCATGATGGAAGATTTATTATGGAGACACCATATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA