Sequence
atgc intronic sequence ATGC exonic sequence...aataatggaattaaatagtgggcaggtggacgctgtttatacattattctgttctattctttatttttcaatcctcatatgctggttttcttgtttccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155384_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 6
aataatggaattaaatagtg--ggcaggt-ggacgctgtttatacat-tattctgttctattctttatttttcaatcctcatatgctggttttcttgtttccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
| | |||| || || | | | |||| |||| | | | || |||| | | || | | || | || | || |||||||||||| |||| ||||| | || ||||| ||||||||||||||||||||||| || ||||||
tccattttaattccatgatgcctgtaactaggacaacgtttctttaaatgttttgtttgagtggttgga----acctttgattcaataattaattgtttcacagGATGATGACATGCCGATTGACGCTCTTATGGAACTAGTGCAGCAAATTGTTTCATTCCATATGAAG
upper sequence: GRMZM2G155384_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 3'ss of exon 5
aataatggaattaaatagtgggcaggtggacg-----ctgtttatacattattctgttctattctttatttttcaatcctcatatgctggttttcttgtttccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
|| | | || || || | || | || | | |||||| | | | | | || | || | | || || | | ||| ||| || | ||||| | |||||||||| ||||| ||||||||| | ||||||||||||
---tctgaattctgatggttggagttttgaggaatgactaaatgtgtcttattcaatgagaaaggtcactgagtcatatttatctacctgt--tcattatctcagAGTGAGGAGGCCTCTATTGACGATTTAATGGAGCTTGTGCAACAAATTGTTGCTTTTCACATGAAG
upper sequence: GRMZM2G155384_T01 (Zea mays), 3'ss of exon 6
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 3'ss of exon 5
-----------------------------------------------------aataatggaattaaatagtgggcag-gtggacgctgtttatacattattctgttctattctttatttttcaatcctcatatgctggttttcttgttt---ccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
||| | | | ||| | ||| | | | ||||| | || ||| | | | ||||| || | || || |||| ||| || | | ||||| | | ||||||| || ||||||||||||||||| ||||||||||||
gttagtaaacaatttggtctttggcaatgttctttagctcgaggagtttcactcatattctggcaacgtcatggatattatggtttgttaatgaatattatgacaatgggctcgttactgaatatggttataatgctcattctttttgttatatcagGGTGAAGAGTCCTCTATTGAAGACTTAATGGATCTTGTGCAGCAAATTGTTTCTTTTCACATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attctgttctattctttatttttcaatcctcatatgctggttttcttgtttccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
ttttcttgtttcc CT-rich tract
ttctattctttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataatggaattaaatagtgggcaggtggacgctgtttatacattattctgttctattctttatttttcaatcctcatatgctggttttcttgtttccagGATGATGACTTGCCCATTGATGTCCTAATGGAGCTAGTGCAGCAAATTGTTTCATTTCACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT