1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttttgttctttcaccttttattccttgcatcttctgtgtttttttggtctcggtacttgactttgttgcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTGAATACAAGCTTCTGGGGGAAGTAAGGATGCTGGGTGCGCTAAGGAAGC
species | Zea mays |
transcript | GRMZM2G155312_T02 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAG ATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTEST: gi|211241154|gb|FL072655.1|FL072655
genomic: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttc ... gcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
EST: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAG ATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
genomic: CTAGTTCTGTCTATCACTGTAAAATTGGTGCTGTTGATGCTGCTGCAAAGgtttttgttc ... gcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTT
ccttgcatcttctgtgtttttttggtctcggtacttgactttgttgcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTGAATACAAGCTTCTGGGGGAAGTAAGGATGCTGGGTGCGCTAAGGAAGC
acttgac putative branch site (score: 38)
tgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttgttctttcaccttttattccttgcatcttctgtgtttttttggtctcggtacttgactttgttgcaattgcagATACGATATCTGGATACTCGTAGGGTCTCAAATGATGAAGTTAAACTTTTTGAATACAAGCTTCTGGGGGAAGTAAGGATGCTGGGTGCGCTAAGGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA