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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacacctgtgacatgcatttagttaccctaccaggcatttatttctgttggggatgcccttttcaatatgattcattcaacaacctgtcttttttggcagGGTAAAATCATGCCAAATGGCACAAGAGATAGTACACTGGAACTTCTTCTGGGTGATAACGGATGGGTTACCCATTATGAAAATGGCATCTGCTATTCAC

Basic information

species Zea mays
transcript GRMZM2G154574_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154574_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g33100.1 (Oryza sativa), 3'ss of exon 6
-------aacacct--gtgacatgcatttagttaccctaccaggc---atttatttctgttggggatgcccttttcaatatgattcattcaacaacctgtcttttttggcagGGTAAAATCATGCCAAATGGCACAAGAGATAGTACACTGGAACTTCTTCTGGGTGATAACGGATGGGTTACCCATTATGAAAATGGCATCTGCTATTCAC
       |  | ||  |  |||   ||||  | ||| || || |    |  |||||||  ||  |||||   ||||||    |  |||       |   |||| ||   |||||||||||||  |||||||||||||||||||| ||  | ||||||||  ||||  || |||| ||| | || ||| ||||||||||||| || || ||||
cttacctagtaacttagcaacagatatttcataacc-tatcatgttcaaagtatttcttctgacgatgc---tttcaactgaacccat-------ctcatcttcttca-cagGGTAAAATCACACCAAATGGCACAAGAGATAGCACTTTAGAACTTCTAGTGGGCAATGACGGGTGGTTGACACATCATGAAAATGGCATTTGTTACTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211413292|gb|FL391611.1|FL391611
EST:     TTTGGCCACTAGTTGCCAAGTCACTTGGTGCACAACGTCTTKCACGCCAA                         GGTAAAATCATGCCAAATKGCACAAGAGATAGTACACTGGAACTTCTTCTG
genomic: TTTGGCCACTAGTTGCCAAGTCACTTGGTGCACAACGTCTTGCACGCCAAgtaagtacta ... tttttggcagGGTAAAATCATGCCAAATGGCACAAGAGATAGTACACTGGAACTTCTTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttggggatgcccttttcaatatgattcattcaacaacctgtcttttttggcagGGTAAAATCATGCCAAATGGCACAAGAGATAGTACACTGGAACTTCTTCTGGGTGATAACGGATGGGTTACCCATTATGAAAATGGCATCTGCTATTCAC
                                      cctgtctttttt  CT-rich tract
              ttttcaatatgatt  TA-rich tract