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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatgctgtggcgagcttgctgtgctatgcttttgtcgtggcatttggttgttgaaagttgaaaccgcaaatgggggtaatcttgtttggcgtctgtgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGACGCCGAAACGGTTCATCAACGACACCATCAGGAGTGACTTCCACCGTAAA

Basic information

species Zea mays
transcript GRMZM2G154278_T02
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154278_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 3'ss of exon 6
gtaggatgctgtggcgagcttgctgtgctatgcttttgtcgtggcatttggttgttgaaagttgaaaccgcaaatgggggtaatcttgtttggcgtctgtgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGACGCCGAAACGGTTCATCAACGACACCATCAGGAGTGACTTCCACCGTAAA
                 | || |       |  |  ||  ||   |  || ||    ||  ||   ||     |||    || |  | |      | | |  | | ||||||||| || || || || |||||||| || || ||||||||||||||||| |||||||| |||||||||||||| ||||| ||||| ||||||||||| 
-----------------gtttacacacagctcatcgtgctgtattacatgcttcgctaatattagcacacttgatgaacttatttctatcctattttttttttctgcagGTGGGATGATGATGTTGTATTCAAGAACCAGGCTCGTGGAGAGACCAAGACACCGAAACGTTTCATCAACGACACTATCAGAAGTGATTTCCACCGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26557186|gb|CA829421.1|CA829421
EST:     AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG                         GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
EST: gi|28910981|gb|CB331711.1|CB331711
EST:     AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG                         GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCCAGAC
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
EST: gi|37376787|gb|CF624950.1|CF624950
EST:     AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAG                         GTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC
genomic: AACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCAAGAGAAGgtaggatgct ... tgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaagttgaaaccgcaaatgggggtaatcttgtttggcgtctgtgctttccagGTGGGACGACGACGTGGTGTTCAAGAATCAAGCACGTGGAGAGACCAAGACGCCGAAACGGTTCATCAACGACACCATCAGGAGTGACTTCCACCGTAAA
                                             tgctttcc  CT-rich tract
                          taatctt  TA-rich tract