1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcgtgaccccttctccatcatcacactctcggccctcaaccaacccccatttgccatcctgttgcatgcagtagctgaacctgactcttttctcttcggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCACAGCTATGGACATCCCACCACCTCGTGGCCCCCTCTG
species | Zea mays |
transcript | GRMZM2G153977_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|211422086|gb|FL442273.1|FL442273
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60344077|gb|DN211050.1|DN211050
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|67016864|gb|CO445613.1|CO445613
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60400185|gb|DN232992.1|DN232992
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60339829|gb|DN206802.1|DN206802
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|21331514|gb|BQ486895.1|BQ486895
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAEST: gi|211224716|gb|FL222434.1|FL222434
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCA
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|47962710|gb|CN845419.1|CN845419
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: GAAGTTCAAGCTGAAACAGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60352456|gb|DN219429.1|DN219429
genomic: GAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|211287001|gb|FL447773.1|FL447773
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: AGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|211420574|gb|FL478622.1|FL478622
genomic: AGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: GCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|78120564|gb|DV538948.1|DV538948
genomic: GCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|16927203|gb|BM080272.1|BM080272
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|31405529|gb|CD484261.1|CD484261
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|32803015|gb|CD955251.1|CD955251
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|67015196|gb|CO443945.1|CO443945
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|32867897|gb|CF007579.1|CF007579
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60354188|gb|DN221161.1|DN221161
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|60396263|gb|DN229132.1|DN229132
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCEST: gi|110519064|gb|EE023651.1|EE023651
genomic: ACATTGCGTTCACCATTGGAGGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTC
EST: GGCAAGAAGTTCAAGCTGAAACCGGAGCAG TACATTTTGAAGGTCGGTGGAAGGACAAGGTGCCCCAGTGCATCAGTGGAT
genomic: GGCAAGAAGTTCAAGCTGAAACCGGAGCAGgtcgtgaccc ... ggttacgcagTACATTCTGAAGGTCGGT-GAAGGACAAGCTG-CCCAGTGCATCAGTGGAT
gccatcctgttgcatgcagtagctgaacctgactcttttctcttcggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCACAGCTATGGACATCCCACCACCTCGTGGCCCCCTCTG
acctgac putative branch site (score: 732)
ctcttttctcttcggt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgtgaccccttctccatcatcacactctcggccctcaaccaacccccatttgccatcctgttgcatgcagtagctgaacctgactcttttctcttcggttacgcagTACATTCTGAAGGTCGGTGAAGGACAAGCTGCCCAGTGCATCAGTGGATTCACAGCTATGGACATCCCACCACCTCGTGGCCCCCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA