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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattattatctcttatccatcttgtcatattgttaagggttgtaccttacatgtgttttcatttcagCTTCGGTGAAATGGTTGCTTGCTTCCGATATGCATCAATTAGAGTCCACTCTGTGTATTTACCACCACCAAAACTTGATTTTACTTCTGAGCATCAGGAA

Basic information

species Zea mays
transcript GRMZM2G153722_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 6
gtacattattatctcttatccatcttgtcatattgttaagggttgtaccttacatgtgttttcatttcagCTTCGGTGAAATGGTTGCTTGCTTCCGATATGCATCAATTAGAGTCCACTCTGTGTATTTACCACCACCAAAACTTGATTTTACTTCTGAGCATCAGGAA
|||     | |   ||  || || |  | | |||| |||    | |  |||||||||  ||  |||| ||||| |||||||||||||||||||||||||||||||| || |  || || || |||||||| |||||||| ||||||||||| |||||| |||| ||||||
gtatcccctcactcctcttcaatttcattaaattggtaaatactatggcttacatgt--ttgtattttagCTTTGGTGAAATGGTTGCTTGCTTCCGATATGCATCGATCAAGGTTCATTCAGTGTATTTGCCACCACCGAAACTTGATTTCACTTCTCAGCACCAGGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccatcttgtcatattgttaagggttgtaccttacatgtgttttcatttcagCTTCGGTGAAATGGTTGCTTGCTTCCGATATGCATCAATTAGAGTCCACTCTGTGTATTTACCACCACCAAAACTTGATTTTACTTCTGAGCATCAGGAA
                               accttac  putative branch site (score: 3)
                                           ttttcatttc  putative PPT
              atattgttaa  TA-rich tract