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gttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
species | Zea mays |
transcript | GRMZM2G153704_T03 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|149083192|gb|EE172463.2|EE172463
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|31355588|gb|CD439945.1|CD439945
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|148996907|gb|EE035711.2|EE035711
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: AATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTTAC-TATCTGAG ATCTCACCAACTGAAATTCGTGCAACACTTGGTACCGTTAATCAACTTTTTEST: gi|78078828|gb|DV507240.1|DV507240
genomic: AATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTT-ACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|211050167|gb|FL124868.1|FL124868
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGT-GAACACTTGGTACCGTTAATCAACTTTTTEST: gi|148981335|gb|EE027589.2|EE027589
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|148953947|gb|EC899333.2|EC899333
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|31355150|gb|CD439507.1|CD439507
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCCACTGAAATTCGTGGAACACTTGGTACEST: gi|78075828|gb|DV504262.1|DV504262
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTAC
EST: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTEST: gi|32847646|gb|CD987327.1|CD987327
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: ACCCCTTTACATATCTGAG ATATCACCAACTGAAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTT
genomic: ACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
acttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
tgttgat putative branch site (score: 4)
tttcctgt putative PPT
aaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTTATTTGCATTGGAATTCTTGCAGCTTTGTTAGCTGGATTGCCTCTGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA