Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttccaaactattctttgcttactcgatatccacaggagtacataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA

Basic information

species Zea mays
transcript GRMZM2G152757_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152757_T04 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os12g08280.1 (Oryza sativa), 3'ss of exon 6
gtagcttccaaactattctttgcttactcgatatccacaggagt-acataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA
||   | |  || |||||||||| || |  |  |||||  |||| || |  |||||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| || |||||||||||||| ||||||||||
gtttgtcctgaattattctttgcctagtacaggtccacgagagttacttgggtaatctggtgtttgaatgctggcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATTGATAGCCAAGCAAAATACGGTGCCCTAGCCCGAGGTGACGGTGCCATTTACTTGCGTTTTCCACACA

upper sequence: GRMZM2G152757_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA05G26250.1 (Glycine max), 3'ss of exon 6
-----------------------------------------gtagcttccaaactattcttt--gcttactcgatatccacaggagtacataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA
                                          ||  ||   |  | ||| ||  |||   |     |  |   |   ||||   |   |   | ||        | ||||||||||||||| |||| || ||||| ||||| || ||||||||||||||||| ||| || |  |||| ||||| || || || ||||| || || ||||
gtagtactgtttctatagttaacacatttttccttattcatatatttttttagtttttcatttagctcttttagatttaatctgcagacatttcttgaccattattacttcatgaacagAAACTTGGTGTCAAAGCACCACCAGTCAGAATTGATAGCCAAGCAAAATATGGAGCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACA

upper sequence: GRMZM2G152757_T04 (Zea mays), 3'ss of exon 6
lower sequence: GLYMA08G09180.1 (Glycine max), 3'ss of exon 6
---------------------------------------------gtagcttccaaactattctttgcttactcgatatccacag-gagtacataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA
                                              |   ||  |   | |  |||   |  |  | ||  |    |   ||||   |   |   | ||        | |||||||| |||||| |||| || ||||| ||||| || ||||||||||||||||| ||| || |  |||| ||||| || || || ||||| || || ||||
gtaatactgttagaactagaagttaacatatttgtcctttttcatattttttttagtttttcttttagctcttttagatttattctgcagacatttcttgaccattattacttcatgaacagAAACTCGGTGTCAAAGCACCACCAGTCAGAATTGATAGCCAAGCAAAATATGGAGCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACA

upper sequence: GRMZM2G152757_T04 (Zea mays), 3'ss of exon 6
lower sequence: Vv04s0044g01480.t01 (Vitis vinifera), 3'ss of exon 6
gtagcttccaaactattctttgcttactcgatatccacaggagtacataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA
     | |   | | | ||||||  ||    |||         |   | |     ||  || |||  ||  | ||||||||||| ||| |||| || ||||||||||| || ||||| || || ||||| |||||  || |||| ||||| ||||||||  | ||||| || || |
----gtactgtattgt-ctttgcagacgtcttattgttctctctgtcttatatgcctaattattttctg--aacagAAACTTGGAGTCAAAGCACCCCCAGTTAGAATTGATAGCCAGGCGAAGTATGGGGCTCTATCCAGAGGAGATGGGGCCATTTATCTTCGCTTCCCTCATA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086723|gb|DV515116.1|DV515116
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32842118|gb|CD981799.1|CD981799
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|13316247|gb|BG410694.1|BG410694
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCA
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCA
EST: gi|211300452|gb|FL250326.1|FL250326
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCTAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32841860|gb|CD981541.1|CD981541
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|211300451|gb|FL250325.1|FL250325
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32841437|gb|CD981118.1|CD981118
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|4572956|gb|AI586605.1|AI586605
EST:     TGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: TGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|211300453|gb|FL250327.1|FL250327
EST:     TATKAAAAGTTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: TAT-GAAAG-TGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32842117|gb|CD981798.1|CD981798
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGGTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|6760483|gb|AW324642.1|AW324642
EST:     TTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: TTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32850770|gb|CD990451.1|CD990451
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32841861|gb|CD981542.1|CD981542
EST:     CTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CTATGAAAGTGCACACTCCATGCATGATTTGACTGGCT-CTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|76016036|gb|DT943206.1|DT943206
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
EST: gi|32850780|gb|CD990461.1|CD990461
EST:     CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG                         AAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT
genomic: CCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAGgtagcttcca ... atgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttactcgatatccacaggagtacataagtaatctggttttttaatgctatcagAAACTTGGTGTCCAAGCTCCTCCAGTTAGAATCGACAGCCAAGCAAAATATGGTGCTCTGGCCCGAGGTGATGGCGCCATTTACTTGCGCTTTCCACACA
                                      ttttttaatgctat  TA-rich tract