1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtgtcaatggcatttggtttgcagtgatttaatttacagccgagaatcatcggttttaccaaacaccaacgcaccacgtacgtgcgcttctgcttctgctgctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTGCAGAACCCCACCGAAGATGACCTCAAGTTCTTCTACGACGGGCAAGGC
species | Zea mays |
transcript | GRMZM2G152477_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|148966045|gb|EE016979.2|EE016979
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|78075832|gb|DV504266.1|DV504266
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: ACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|16927228|gb|BM080297.1|BM080297
genomic: ACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|32845008|gb|CD984689.1|CD984689
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTEST: gi|149107110|gb|EE189000.2|EE189000
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGT
EST: CTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|32845140|gb|CD984821.1|CD984821
genomic: CTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTAEST: gi|211405855|gb|FK952122.1|FK952122
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTA
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|60349280|gb|DN216253.1|DN216253
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|32844554|gb|CD984235.1|CD984235
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTEST: gi|50335509|gb|CO530635.1|CO530635
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|78114010|gb|DV532399.1|DV532399
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|32844045|gb|CD983726.1|CD983726
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTEST: gi|37393857|gb|CF634195.1|CF634195
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|71430080|gb|DR811130.1|DR811130
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|76012839|gb|DT940009.1|DT940009
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|211405854|gb|FK952121.1|FK952121
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGC-GTTCCAAGGCATGGAGAGGAGTEST: gi|32835913|gb|CD975591.1|CD975591
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACGTCAGCAGCAGAGACAG CCCAATCCAGTEST: gi|18162089|gb|BM331928.1|BM331928
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|101387886|gb|EB815958.1|EB815958
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: CAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|110940413|gb|EE160570.1|EE160570
genomic: CAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: GAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|71767916|gb|DR965853.1|DR965853
genomic: GAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|76289548|gb|DV029116.1|DV029116
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTEST: gi|44900102|gb|CK826647.1|CK826647
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGTGGAGTEST: gi|211405853|gb|FK952120.1|FK952120
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: TACATCAACCTTCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAG CCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAACGGGCATGACCACTGCCTGGAACACATCAGCAGCAGAGACAGgttagtgtca ... gctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgtcaatggcatttggtttgcagtgatttaatttacagccgagaatcatcggttttaccaaacaccaacgcaccacgtacgtgcgcttctgcttctgctgctgctgcagCCCAATCCAGTACTTCACAAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTGCAGAACCCCACCGAAGATGACCTCAAGTTCTTCTACGACGGGCAAGGC
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