Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaagcaccatacgatacagagatgaattcaagtaactttcagtccgtttccaagatactgaaccttgtgaaattgcttcttctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTCTTCCATCCAAACAAGGACAAGCTCCGATTCTTCTACGACGGGCAAGGG

Basic information

species Zea mays
transcript GRMZM2G152447_T02
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50328960|gb|CO524086.1|CO524086
EST:     TACATCAATGGACACGATCACTGTTTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|211512568|gb|FL110029.1|FL110029
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGARAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|71436322|gb|DR817372.1|DR817372
EST:     TACATCAATGGACACGATCACTGTTTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|18169298|gb|BM339138.1|BM339138
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|24934165|gb|CA452383.1|CA452383
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|149107456|gb|EE189334.2|EE189334
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCCGTATTTCACGAG
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAG
EST: gi|78109968|gb|DV528383.1|DV528383
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|78109969|gb|DV528384.1|DV528384
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAAGCGGTTCCAAGGCATGAAGAGG
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGG
EST: gi|78086366|gb|DV514759.1|DV514759
EST:     TACATCAATGGACACGATCACTTTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|211512569|gb|FL110030.1|FL110030
EST:     TACATCAATGGGCACGATCACTGCCTGGAACACATTAGCAGCATAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTT
EST: gi|78110599|gb|DV529007.1|DV529007
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|116828633|gb|EC859889.1|EC859889
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|101394597|gb|EB819233.1|EB819233
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
EST: gi|56461959|gb|CK986257.1|CK986257
EST:     TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAG                         TCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT
genomic: TACATCAATGGACACGATCACTGTCTGGAGCACATTAGCAGCAGAGACAGgtacaagcac ... tctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcagtccgtttccaagatactgaaccttgtgaaattgcttcttctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTCTTCCATCCAAACAAGGACAAGCTCCGATTCTTCTACGACGGGCAAGGG
                                     ttgcttcttctgtctc  CT-rich tract
                                tgaaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaagcaccatacgatacagagatgaattcaagtaactttcagtccgtttccaagatactgaaccttgtgaaattgcttcttctgtctcagTCCACTCCAGTATTTCACGAGCGGAGGCGGTTCCAAGGCATGGAGAGGAGTCTTCCATCCAAACAAGGACAAGCTCCGATTCTTCTACGACGGGCAAGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT